RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ANKRD34BA5PLL1 514 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 SHOXO15266 292 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 SOX15O60248 233 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 SLC22A5O76082 557 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 CRYZL1O95825 349 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 PPYP01298 95 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 PF4P02776 101 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 RRASP10301 218 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 CDX1P47902 265 aaPredicted RBP12.35□□□□□ -0.43
CLN3-201ENST00000333496 PJVKQ0ZLH3 352 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 KIAA0141Q14154 515 aaPredicted RBP12.35□□□□□ -0.43
CLN3-201ENST00000333496 RTL8BQ17RB0 113 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 MRGPRG-AS1Q2M3A8 158 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 Q5BKY6 102 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 PPP1R27Q86WC6 154 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 ZNF695Q8IW36 515 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 MYOZ3Q8TDC0 251 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 GPHA2Q96T91 129 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 IFT46Q9NQC8 304 aa12.35□□□□□ -0.43
CLN3-201ENST00000333496 ANKRD20A5PA0PJZ0 165 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 NUDT19A8MXV4 375 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 ARPC1BO15143 372 aaKnown RBP12.34□□□□□ -0.43
CLN3-201ENST00000333496 WIPF1O43516 503 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 BRWD1-AS2P59051 145 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 SSBP1Q04837 148 aaKnown RBP12.34□□□□□ -0.43
CLN3-201ENST00000333496 ECSCRQ19T08 205 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 BEAN1Q3B7T3 259 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 OVCH2Q7RTZ1 564 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 C9orf62Q8N4C0 152 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 LINC00482Q8N8I6 264 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 SECTM1Q8WVN6 248 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 GIMAP1Q8WWP7 306 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 DUX3Q96PT4 197 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 CCL28Q9NRJ3 127 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 TAS2R8Q9NYW2 309 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 HSPB11Q9Y547 144 aa12.34□□□□□ -0.43
CLN3-201ENST00000333496 SULT1A3P0DMM9 295 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 SULT1A4P0DMN0 295 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 CD33P20138 364 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 KCTD9Q7L273 389 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 MRPL41Q8IXM3 137 aaKnown RBP12.33□□□□□ -0.43
CLN3-201ENST00000333496 OR11H7Q8NGC8 314 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 P2RX4Q99571 388 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 HRASLSQ9HDD0 168 aa12.33□□□□□ -0.43
CLN3-201ENST00000333496 A0A1W2PN81 502 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 FCGR3BO75015 233 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 IGLL1P15814 213 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 FAUP35544 74 aaKnown RBP12.33□□□□□ -0.44
CLN3-201ENST00000333496 CHRNA7P36544 502 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 CCR6P51684 374 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 FXYD3Q14802 87 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 DEFB136Q30KP8 78 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 OR2B11Q5JQS5 317 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 KPRPQ5T749 579 aaPredicted RBP12.33□□□□□ -0.44
CLN3-201ENST00000333496 LAMTOR1Q6IAA8 161 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 DHRS11Q6UWP2 260 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 ZNF491Q8N8L2 437 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 LFNGQ8NES3 379 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 OSR1Q8TAX0 266 aaPredicted RBP12.33□□□□□ -0.44
CLN3-201ENST00000333496 RAX2Q96IS3 184 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 HSD17B10Q99714 261 aaKnown RBP12.33□□□□□ -0.44
CLN3-201ENST00000333496 EHFQ9NZC4 300 aa12.33□□□□□ -0.44
CLN3-201ENST00000333496 PMP2P02689 132 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 RAB9AP51151 201 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 FXYD4P59646 89 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 MSMO1Q15800 293 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 AKIRIN2Q53H80 203 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 IDO2Q6ZQW0 420 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 ZNF431Q8TF32 576 aaPredicted RBP12.32□□□□□ -0.44
CLN3-201ENST00000333496 ABHD5Q8WTS1 349 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 CASTOR1Q8WTX7 329 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 ARPC1AQ92747 370 aa12.32□□□□□ -0.44
CLN3-201ENST00000333496 TNFSF12O43508 249 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 SSNA1O43805 119 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 SNAPC5O75971 98 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 MYCNOSP40205 109 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 HTR2BP41595 481 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 UBE2KP61086 200 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 TMEM267Q0VDI3 215 aaPredicted RBP12.31□□□□□ -0.44
CLN3-201ENST00000333496 THOC7Q6I9Y2 204 aaKnown RBP12.31□□□□□ -0.44
CLN3-201ENST00000333496 UNQ5815/PRO19632Q6UWF5 114 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 ZNF66Q6ZN08 573 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 TCTEX1D1Q8N7M0 179 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 TEX45Q8NA69 505 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 SLC5A7Q9GZV3 580 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 GNB4Q9HAV0 340 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 SCP2D1Q9UJQ7 156 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 FOXA2Q9Y261 457 aaPredicted RBP12.31□□□□□ -0.44
CLN3-201ENST00000333496 PRELID3BQ9Y3B1 194 aa12.31□□□□□ -0.44
CLN3-201ENST00000333496 SMLR1H3BR10 107 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 CCL24O00175 119 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 HRH1P35367 487 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 MECP2P51608 486 aaKnown RBP12.3□□□□□ -0.44
CLN3-201ENST00000333496 TAS2R46P59540 309 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 ACTBL2Q562R1 376 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 TMEM65Q6PI78 240 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 ZNF818PQ6ZRF7 136 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 TMEM17Q86X19 198 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 TMEM229BQ8NBD8 167 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 OR5H2Q8NGV7 314 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms