RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 OR2F1Q13607 317 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 TMEM187Q14656 261 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 ZNF695Q8IW36 515 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 LGI3Q8N145 548 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 KIR3DL3Q8N743 410 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 TMEM222Q9H0R3 208 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 H0Y980 276 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 ARG1P05089 322 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 MSMBP08118 114 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 PRTN3P24158 256 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 TMEM88Q6PEY1 159 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 LIAT1Q6ZQX7 453 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 ACOT7LQ6ZUV0 252 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 COMMD9Q9P000 198 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 NBPF19A0A087WUL8 3843 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 A0A087X0M5 115 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 A0A1B0GX30 115 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 B4DSR2 109 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 RD3LP0DJH9 198 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 RPL30P62888 115 aaKnown RBP8.17□□□□□ -1.1
HMGB3-201ENST00000325307 SRPXP78539 464 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 PAX2Q02962 417 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 RAB32Q13637 225 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 MSMO1Q15800 293 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 TMEM268Q5VZI3 342 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 ZNF66Q6ZN08 573 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.17□□□□□ -1.1
HMGB3-201ENST00000325307 ZNF596Q8TC21 504 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 GAGE1Q13065 139 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 PRSS57Q6UWY2 283 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 SPAG16Q8N0X2 631 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 TSNAXQ99598 290 aaKnown RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 GSX1Q9H4S2 264 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 CYTL1Q9NRR1 136 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 PRRC2AP48634 2157 aaKnown RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 LINC00473A8K010 186 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 FCGR3BO75015 233 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 IFNA10P01566 189 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 IFNA21P01568 189 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 DUTP33316 252 aaKnown RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 TNFRSF9Q07011 255 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 ZNF816Q0VGE8 651 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 NCR3LG1Q68D85 454 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 ODF3L1Q8IXM7 274 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 NOTCH2Q04721 2471 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 ITPR2Q14571 2701 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 PROP1O75360 226 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 HLA-DRB5Q30154 266 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 C1orf229Q6ZS94 237 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 LINC00311Q8N616 119 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 C8orf31Q8N9H6 132 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 STOML3Q8TAV4 291 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 DCUN1D4Q92564 292 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 LHX4Q969G2 390 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 MSI2Q96DH6 328 aaKnown RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 C2orf50Q96LR7 162 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 SIRPDQ9H106 197 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 HIF1ANQ9NWT6 349 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 AMMECR1Q9Y4X0 333 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-201ENST00000325307 INSIG2Q9Y5U4 225 aa8.16□□□□□ -1.1
HMGB3-201ENST00000325307 UCP1P25874 307 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 LPAR6P43657 344 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 LGALS4P56470 323 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 SNRPEP62304 92 aaKnown RBP8.15□□□□□ -1.1
HMGB3-201ENST00000325307 LYZL2Q7Z4W2 148 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 C15orf54Q8N8G6 183 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 THAP6Q8TBB0 222 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 TMEM186Q96B77 213 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 POLR3KQ9Y2Y1 108 aaPredicted RBP8.15□□□□□ -1.1
HMGB3-201ENST00000325307 BTBD17A6NE02 478 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 RAMP3O60896 148 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 NPBWR1P48145 328 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 AKR1C2P52895 323 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 LOXL1Q08397 574 aaPredicted RBP8.15□□□□□ -1.1
HMGB3-201ENST00000325307 DNLZQ5SXM8 178 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 GGNBP1Q5YKI7 109 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 PRSS54Q6PEW0 395 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 LHFPL4Q7Z7J7 247 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 SLC35G3Q8N808 338 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 LINC01356Q8N9X3 169 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 WFDC11Q8NEX6 87 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 RPEQ96AT9 228 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 C18orf12Q96KH6 178 aa8.15□□□□□ -1.1
HMGB3-201ENST00000325307 MRPL20Q9BYC9 149 aaKnown RBP8.15□□□□□ -1.1
HMGB3-201ENST00000325307 A0A1W2PN81 502 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 TGFAP01135 160 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 HOXB4P17483 251 aaPredicted RBP8.15□□□□□ -1.11
HMGB3-201ENST00000325307 HNF1AP20823 631 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 CHRNA7P36544 502 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 THBS3P49746 956 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 DIAPH2-AS1Q14236 149 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 BEND2Q8NDZ0 799 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 ADTRPQ96IZ2 230 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 GSKIPQ9P0R6 139 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 RNF24Q9Y225 148 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 CREBBPQ92793 2442 aa8.15□□□□□ -1.11
HMGB3-201ENST00000325307 BUB1B-PAK6H3BSN5 160 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 IGLV1-47P01700 117 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 HTR1DP28221 377 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CDKN1BP46527 198 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms