RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 IGKV3-20P01619 116 aa7.52□□□□□ -1.2
USF3-201ENST00000316407 UNC119Q13432 240 aa7.52□□□□□ -1.2
USF3-201ENST00000316407 TRGV5A0A0B4J1U4 118 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 S1PR2O95136 353 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 CGAP01215 116 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 CARHSP1Q9Y2V2 147 aaKnown RBP7.52□□□□□ -1.21
USF3-201ENST00000316407 FAM181BA6NEQ2 426 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 K7N7A8 449 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 NEUROG1Q92886 237 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 METTL26Q96S19 204 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 KBTBD11-OT1A0A1B0GTJ5 212 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 ESDP10768 282 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 AICDAQ9GZX7 198 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 TICRRQ7Z2Z1 1910 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 A0A0G2JLM5 398 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 PGPA6NDG6 321 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 PRELID3AQ96N28 172 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 TMEM56-RWDD3S4R434 201 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 TRAV5A0A0B4J249 113 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 ID1P41134 155 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 GAGE13Q4V321 117 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 SPSB4Q96A44 273 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 BHLHA15Q7RTS1 189 aaPredicted RBP7.52□□□□□ -1.21
USF3-201ENST00000316407 TNCP24821 2201 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 TMEM229AB2RXF0 380 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 TFF3Q07654 80 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 SYT8Q8NBV8 401 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 CLDN14O95500 239 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 SARAFQ96BY9 339 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 DTX4Q9Y2E6 619 aa7.52□□□□□ -1.21
USF3-201ENST00000316407 M0R381 172 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 CELA2BP08218 269 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 KIR2DL4Q99706 377 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 MRPS16Q9Y3D3 137 aaKnown RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 PPIAL4EA0A075B759 164 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 IGHV3OR16-13A0A075B7E8 117 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 IGHV3-74A0A0B4J1X5 117 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 PPIAL4FP0DN26 164 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 VAX1Q5SQQ9 334 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 PPIAL4AQ9Y536 164 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 TRBV7-9A0A0J9YWB2 115 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 HIGD1CA8MV81 97 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 MOSP00540 346 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 NUTF2P61970 127 aaKnown RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 ATG4DQ86TL0 474 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 ZNF708P17019 499 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 HOXA5P20719 270 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 RPL8P62917 257 aaKnown RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 Q6ZNB5 142 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 WDYHV1Q96HA8 205 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 SCGB3A1Q96QR1 104 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 CHODLQ9H9P2 273 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 GPX1P07203 203 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 C8orf82Q6P1X6 216 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 SPRED2Q7Z698 418 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 CRIM1Q9NZV1 1036 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 LOC101059948A0A1B0GTJ6 334 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 PSG1P11464 419 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 RPL34P49207 117 aaKnown RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 RSPO3Q9BXY4 272 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 PEAR1Q5VY43 1037 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 PRDM13Q9H4Q3 707 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 C5orf30Q96GV9 206 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 NPDC1Q9NQX5 325 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 OCIAD2Q56VL3 154 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 VKORC1Q9BQB6 163 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 OBSL1O75147 1896 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 TMEM101Q96IK0 257 aa7.51□□□□□ -1.21
USF3-201ENST00000316407 LINC00615Q96LM1 132 aaPredicted RBP7.51□□□□□ -1.21
USF3-201ENST00000316407 RND2P52198 227 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 CDX4O14627 284 aaPredicted RBP7.5□□□□□ -1.21
USF3-201ENST00000316407 HOXB1P14653 301 aaPredicted RBP7.5□□□□□ -1.21
USF3-201ENST00000316407 MAGEA5P43359 124 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 MVB12AQ96EY5 273 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 ACACAQ13085 2346 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 ZNF48Q96MX3 618 aaPredicted RBP7.5□□□□□ -1.21
USF3-201ENST00000316407 JMJD8Q96S16 334 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 NCOA6Q14686 2063 aaPredicted RBP7.5□□□□□ -1.21
USF3-201ENST00000316407 MSGN1A6NI15 193 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 ISXQ2M1V0 245 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 MED13Q9UHV7 2174 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 IGHV3-35A0A0C4DH35 117 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 IL11P20809 199 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 EVI2AP22794 236 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 TTC9CQ8N5M4 171 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 SLC25A28Q96A46 364 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 RLFQ13129 1914 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 IGHV3-49A0A0A0MS15 119 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 NPIPB6E9PJ23 425 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 PRDX2P32119 198 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 LINC00305Q7Z4B0 112 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 IGHV3-66A0A0C4DH42 116 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 PEX11BO96011 259 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 ZBTB34Q8NCN2 500 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 TOX2Q96NM4 488 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 WFDC6Q9BQY6 131 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 NPCDR1Q9BY65 106 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 SCNM1Q9BWG6 230 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 ZNF831Q5JPB2 1677 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 GAGE2BQ13066 116 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms