RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ELK1P19419 428 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 INSL3P51460 131 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 ZNF45Q02386 682 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 CD69Q07108 199 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 ACSM6Q6P461 480 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 ZBTB34Q8NCN2 500 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 OR5H2Q8NGV7 314 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 VSTM2AQ8TAG5 236 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 CMTM3Q96MX0 182 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 SPIN2AQ99865 258 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 B9D2Q9BPU9 175 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 SPIN2BQ9BPZ2 258 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 BCL7BQ9BQE9 202 aa12.52□□□□□ -0.41
LSM1-201ENST00000311351 ZNF2Q9BSG1 426 aaPredicted RBP12.52□□□□□ -0.41
LSM1-201ENST00000311351 RANGRFQ9HD47 186 aaPredicted RBP12.52□□□□□ -0.41
LSM1-201ENST00000311351 A0A1B0GW64 132 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 TEX22C9J3V5 150 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 E7EUB6 86 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 NOL3O60936 208 aaKnown RBP12.51□□□□□ -0.41
LSM1-201ENST00000311351 HLA-DMAP28067 261 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 HRH1P35367 487 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 RPL27AP46776 148 aaKnown RBP12.51□□□□□ -0.41
LSM1-201ENST00000311351 RPL5P46777 297 aaKnown RBP12.51□□□□□ -0.41
LSM1-201ENST00000311351 TAS2R46P59540 309 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 RHOGP84095 191 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 CATR1Q13166 79 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 AADACL3Q5VUY0 350 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 MZT2AQ6P582 158 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 ZNF429Q86V71 674 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 GPX8Q8TED1 209 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 RAB2BQ8WUD1 216 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 MOB3AQ96BX8 217 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 AKIP1Q9NQ31 210 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 ADAM30Q9UKF2 790 aa12.51□□□□□ -0.41
LSM1-201ENST00000311351 LSM4Q9Y4Z0 139 aaKnown RBP12.51□□□□□ -0.41
LSM1-201ENST00000311351 SMIM31A0A1B0GVY4 71 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 RBFOX2O43251 390 aaKnown RBP eCLIP12.5□□□□□ -0.41
LSM1-201ENST00000311351 S1PR2O95136 353 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 HRASP01112 189 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 RLN1P04808 185 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 IL6RP08887 468 aaPredicted RBP12.5□□□□□ -0.41
LSM1-201ENST00000311351 ZP3P21754 424 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 GNRHRP30968 328 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 DCTN2Q13561 401 aaKnown RBP12.5□□□□□ -0.41
LSM1-201ENST00000311351 EXOSC2Q13868 293 aaKnown RBP12.5□□□□□ -0.41
LSM1-201ENST00000311351 RNASE12Q5GAN4 147 aaKnown RBP12.5□□□□□ -0.41
LSM1-201ENST00000311351 OR4A47Q6IF82 309 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 ZNF343Q6P1L6 599 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 LYSMD2Q8IV50 215 aa12.5□□□□□ -0.41
LSM1-201ENST00000311351 FYTTD1Q96QD9 318 aaKnown RBP12.5□□□□□ -0.41
LSM1-201ENST00000311351 TRAV3A0A0B4J244 114 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 RPA2P15927 270 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 SPNP16150 400 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 RPL8P62917 257 aaKnown RBP12.49□□□□□ -0.41
LSM1-201ENST00000311351 DHRS11Q6UWP2 260 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 TTC9CQ8N5M4 171 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 USMG5Q96IX5 58 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 RSRP1Q9BUV0 290 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 HRASLSQ9HDD0 168 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 BET1LQ9NYM9 111 aa12.49□□□□□ -0.41
LSM1-201ENST00000311351 PEF1Q9UBV8 284 aaKnown RBP12.49□□□□□ -0.41
LSM1-201ENST00000311351 TRBV9A0A0B4J1U6 114 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 FAM223BA6NKX1 122 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 FAM25AB3EWG3 89 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 FAM25CB3EWG5 89 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 FAM25GB3EWG6 89 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 OR2J3O76001 311 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 ZNF735P0CB33 412 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 AREGP15514 252 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 ZNF182P17025 639 aaPredicted RBP12.48□□□□□ -0.41
LSM1-201ENST00000311351 HLA-GP17693 338 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 MAS1LP35410 378 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 TMBIM6P55061 237 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 SYNJ2BPP57105 145 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 TAS2R31P59538 309 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 CLVS1Q8IUQ0 354 aaPredicted RBP12.48□□□□□ -0.41
LSM1-201ENST00000311351 FAM223AQ8IWN6 122 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 OR4C12Q96R67 309 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 SCPEP1Q9HB40 452 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 ZNF257Q9Y2Q1 563 aa12.48□□□□□ -0.41
LSM1-201ENST00000311351 DPPA5A6NC42 116 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 CGB1A6NKQ9 187 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 PGLYRP1O75594 196 aaPredicted RBP12.47□□□□□ -0.41
LSM1-201ENST00000311351 HPRT1P00492 218 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 REG1AP05451 166 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 NQO2P16083 231 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 RCVRNP35243 200 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 KLF5Q13887 457 aaPredicted RBP12.47□□□□□ -0.41
LSM1-201ENST00000311351 OR6Q1Q8NGQ2 317 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 OR6F1Q8NGZ6 308 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 TMEM140Q9NV12 185 aa12.47□□□□□ -0.41
LSM1-201ENST00000311351 NPIPB5A8MRT5 1133 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 BMPR1BO00238 502 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 GP9P14770 177 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 ATP5G2Q06055 141 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 POU2AF1Q16633 256 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 RPEL1Q2QD12 228 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 PHLDA2Q53GA4 152 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 SLC25A42Q86VD7 318 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 NECAP1Q8NC96 275 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms