RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CSN3P07498 182 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 C15orf32Q32M92 178 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 TIMM50Q3ZCQ8 353 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 PUSL1Q8N0Z8 303 aaKnown RBP14.87□□□□□ -0.03
LIME1-201ENST00000309546 Q8N1Y9 231 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 NECAP1Q8NC96 275 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 IFT46Q9NQC8 304 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 PEMTQ9UBM1 199 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 ZNF257Q9Y2Q1 563 aa14.87□□□□□ -0.03
LIME1-201ENST00000309546 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.86□□□□□ -0.03
LIME1-201ENST00000309546 E7EUB6 86 aa14.86□□□□□ -0.03
LIME1-201ENST00000309546 BMPR1BO00238 502 aa14.86□□□□□ -0.03
LIME1-201ENST00000309546 LSM3P62310 102 aaKnown RBP14.86□□□□□ -0.03
LIME1-201ENST00000309546 LCN12Q6JVE5 192 aa14.86□□□□□ -0.03
LIME1-201ENST00000309546 TMEM17Q86X19 198 aa14.86□□□□□ -0.03
LIME1-201ENST00000309546 SPAG16Q8N0X2 631 aa14.86□□□□□ -0.03
LIME1-201ENST00000309546 RYR3Q15413 4870 aa14.86□□□□□ -0.03
LIME1-201ENST00000309546 PPP5D1E7EU14 171 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 SULT1C2O00338 296 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 AIREO43918 545 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 IL6RP08887 468 aaPredicted RBP14.85□□□□□ -0.03
LIME1-201ENST00000309546 MYOD1P15172 320 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 MAS1LP35410 378 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 CBX5P45973 191 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 RPL8P62917 257 aaKnown RBP14.85□□□□□ -0.03
LIME1-201ENST00000309546 CATR1Q13166 79 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 MSMO1Q15800 293 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 GTSCR1Q86UQ5 136 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 ZBTB34Q8NCN2 500 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 OR5AP2Q8NGF4 316 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 HRASLSQ9HDD0 168 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 VCX3AQ9NNX9 186 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 FBXL7Q9UJT9 491 aa14.85□□□□□ -0.03
LIME1-201ENST00000309546 C3orf84H3BNL1 204 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 IGHV3-23P01764 117 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 ZNF735P0CB33 412 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 AREGP15514 252 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 HERV-K104P61576 105 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 UBE2NLQ5JXB2 153 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 OR4A47Q6IF82 309 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 CROCCP3Q8IVE0 287 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 Q8N402 240 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 OR51H1Q8NH63 302 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 S100A16Q96FQ6 103 aaKnown RBP14.84□□□□□ -0.03
LIME1-201ENST00000309546 SLC2A9Q9NRM0 540 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 EHFQ9NZC4 300 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 S4R3C0 116 aa14.84□□□□□ -0.03
LIME1-201ENST00000309546 A0A1B0GW64 132 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 IZUMO1RA6ND01 250 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 NPIPB5A8MRT5 1133 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 XRCC3O43542 346 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 TMEM127O75204 238 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 HLA-AP01891 365 aaKnown RBP14.83□□□□□ -0.04
LIME1-201ENST00000309546 REG1AP05451 166 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 HLA-GP17693 338 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 RPS19P39019 145 aaKnown RBP14.83□□□□□ -0.04
LIME1-201ENST00000309546 TMEM69Q5SWH9 247 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 AADACL3Q5VUY0 350 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 ZNF818PQ6ZRF7 136 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 SAMD12Q8N8I0 201 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 DYNLRB2Q8TF09 96 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 C19orf73Q9NVV2 129 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 BET1LQ9NYM9 111 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 SIGLEC8Q9NYZ4 499 aa14.83□□□□□ -0.04
LIME1-201ENST00000309546 STAB2Q8WWQ8 2551 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 PSMB6P28072 239 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 TSPAN14Q8NG11 270 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 OR4A5Q8NH83 315 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 MUC7Q8TAX7 377 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 KCTD12Q96CX2 325 aaKnown RBP14.82□□□□□ -0.04
LIME1-201ENST00000309546 YIPF6Q96EC8 236 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 AIFM2Q9BRQ8 373 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 DNAH7Q8WXX0 4024 aa14.82□□□□□ -0.04
LIME1-201ENST00000309546 A0A087WXM4 84 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 A8MZ25 164 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 RBFOX2O43251 390 aaKnown RBP eCLIP14.81□□□□□ -0.04
LIME1-201ENST00000309546 NDUFB8O95169 186 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 DHFRP00374 187 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 DEFA4P12838 97 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 TAS2R31P59538 309 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 TAS2R20P59543 309 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 FAM209BQ5JX69 171 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 CLEC19AQ6UXS0 136 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 GIMAP1Q8WWP7 306 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 FANCD2OSQ96PS1 177 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 TM2D3Q9BRN9 247 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 TUBA4BQ9H853 241 aa14.81□□□□□ -0.04
LIME1-201ENST00000309546 TRAV3A0A0B4J244 114 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 GGCTO75223 188 aaKnown RBP14.8□□□□□ -0.04
LIME1-201ENST00000309546 OR2C1O95371 312 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 TNFAIP8O95379 198 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 HPRT1P00492 218 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 PMP2P02689 132 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 CRYGCP07315 174 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 RPA2P15927 270 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 NQO2P16083 231 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 EDN2P20800 178 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 ARL3P36405 182 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 CD300EQ496F6 205 aaPredicted RBP14.8□□□□□ -0.04
LIME1-201ENST00000309546 DMBX1Q8NFW5 382 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms