RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 DHRS13Q6UX07 377 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 RTN4RL2Q86UN3 420 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 WDR31Q8NA23 367 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 OPN3Q9H1Y3 402 aaPredicted RBP16.36■□□□□ 0.21
USP48-201ENST00000308271 IGLV3-12A0A075B6K2 115 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 C1QTNF9BB2RNN3 333 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 C12orf77C9JDV5 145 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 DLL1O00548 723 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 SOX8P57073 446 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 RASL11BQ9BPW5 248 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 ASCL3Q9NQ33 180 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 IGLV3-19P01714 112 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 CSRP2Q16527 193 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 SRSF7Q16629 238 aaKnown RBP eCLIP16.36■□□□□ 0.213e-8■□□□□ 10.9
USP48-201ENST00000308271 TMEM108Q6UXF1 575 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 VOPP1Q96AW1 172 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 MRPL32Q9BYC8 188 aaKnown RBP16.36■□□□□ 0.21
USP48-201ENST00000308271 WNT10AQ9GZT5 417 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 ZNF430Q9H8G1 570 aaPredicted RBP16.36■□□□□ 0.21
USP48-201ENST00000308271 THYN1Q9P016 225 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 LAMTOR2Q9Y2Q5 125 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 MDC1Q14676 2089 aaKnown RBP16.36■□□□□ 0.21
USP48-201ENST00000308271 PGPA6NDG6 321 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 M0R296 226 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 CCL17Q92583 94 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 RND1Q92730 232 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 TMEM70Q9BUB7 260 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 CEP250Q9BV73 2442 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 A0A1W2PQM1 296 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 C1QTNF9P0C862 333 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 OR51G1Q8NGK1 321 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 MPDZO75970 2070 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 IGKV1-12A0A0C4DH73 117 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 IGKV1D-12P01611 117 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 IGHV2-5P01817 119 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 S100A4P26447 101 aaKnown RBP16.35■□□□□ 0.21
USP48-201ENST00000308271 NMSQ5H8A3 153 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 RNF144BQ7Z419 303 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 VSIRQ9H7M9 311 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 C17orf98A8MV24 154 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 C1orf194Q5T5A4 169 aa16.35■□□□□ 0.21
USP48-201ENST00000308271 PRR19A6NJB7 356 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 CIDEAO60543 219 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 TMEM116Q8NCL8 245 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 TMEM171Q8WVE6 324 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 KCNS1Q96KK3 526 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 OR8B2Q96RD0 313 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 CALYQ9NYX4 217 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 CLPSP04118 112 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 OR4A8P0C604 315 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 LINC00271P0C7V0 271 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 ADMP35318 185 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 ZNF146Q15072 292 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 NRN1Q9NPD7 142 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 NAPSAO96009 420 aa16.34■□□□□ 0.21
USP48-201ENST00000308271 RRHO14718 337 aa16.33■□□□□ 0.21
USP48-201ENST00000308271 CRYGSP22914 178 aa16.33■□□□□ 0.21
USP48-201ENST00000308271 RPL8P62917 257 aaKnown RBP16.33■□□□□ 0.21
USP48-201ENST00000308271 DNASE2BQ8WZ79 361 aa16.33■□□□□ 0.21
USP48-201ENST00000308271 OR2T8A6NH00 312 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 HES3Q5TGS1 186 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 TCF23Q7RTU1 214 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 SSBP3Q9BWW4 388 aaPredicted RBP16.33■□□□□ 0.2
USP48-201ENST00000308271 PRDM13Q9H4Q3 707 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 HIGD1AQ9Y241 93 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 CRYABP02511 175 aaKnown RBP16.33■□□□□ 0.2
USP48-201ENST00000308271 SSTR5P35346 364 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 EFNA2O43921 213 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 SCGB1C2P0DMR2 95 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 ZNF324BQ6AW86 544 aaPredicted RBP16.33■□□□□ 0.2
USP48-201ENST00000308271 PRNTQ86SH4 94 aa16.33■□□□□ 0.2
USP48-201ENST00000308271 COLQQ9Y215 455 aaPredicted RBP16.33■□□□□ 0.2
USP48-201ENST00000308271 MED12Q93074 2177 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 RND2P52198 227 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 TNFSF13O75888 250 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 CGAP01215 116 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 TMEM177Q53S58 311 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 FAM214BQ7L5A3 538 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 KLF14Q8TD94 323 aaPredicted RBP16.32■□□□□ 0.2
USP48-201ENST00000308271 RFNGQ9Y644 331 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 VKORC1L1Q8N0U8 176 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 PMCHL2Q9BQD1 86 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 CHODLQ9H9P2 273 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 ANAPC10Q9UM13 185 aa16.32■□□□□ 0.2
USP48-201ENST00000308271 SPSB3Q6PJ21 355 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 WBP1Q96G27 269 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 MS4A5Q9H3V2 200 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 SMOC1Q9H4F8 434 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 PNRC2Q9NPJ4 139 aaKnown RBP16.31■□□□□ 0.2
USP48-201ENST00000308271 ATXN7O15265 892 aaPredicted RBP16.31■□□□□ 0.2
USP48-201ENST00000308271 PCSK4Q6UW60 755 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 LIPFP07098 398 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 FABP2P12104 132 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 NMUP48645 174 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 PGLYRP4Q96LB8 373 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 AGMATQ9BSE5 352 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 IFNL4K9M1U5 179 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 UQCRFS1P47985 274 aa16.31■□□□□ 0.2
USP48-201ENST00000308271 SNRNP40Q96DI7 357 aaKnown RBP16.31■□□□□ 0.2
USP48-201ENST00000308271 GNG7O60262 68 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms