RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 PLAC1Q9HBJ0 212 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 LSM4Q9Y4Z0 139 aaKnown RBP10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 SYNGR1O43759 233 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 PGPA6NDG6 321 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 SRSF6Q13247 344 aaKnown RBP10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 VN1R2Q8NFZ6 395 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 COLCA2A8K830 154 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 ZIC3O60481 467 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 LGALS7P47929 136 aa10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 RPS20P60866 119 aaKnown RBP10.14□□□□□ -0.79
SHROOM3-201ENST00000296043 CXCL1P09341 107 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 TNFSF14O43557 240 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 OR4A5Q8NH83 315 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 RGPD3A6NKT7 1758 aaPredicted RBP10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 RGPD4Q7Z3J3 1758 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 TRBV7-9A0A0J9YWB2 115 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 TFF3Q07654 80 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 VKORC1L1Q8N0U8 176 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 RPP21Q9H633 154 aaKnown RBP10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 PYY3Q5JQD4 70 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 H0YIG0 161 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 CDX4O14627 284 aaPredicted RBP10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 ZNF56Q15929 161 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 TMEM78Q5T7P6 136 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 WFDC12Q8WWY7 111 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 TNFRSF4P43489 277 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 KIAA0040Q15053 153 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 CCL17Q92583 94 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 SMIM8Q96KF7 97 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 MRGPRX1Q96LB2 322 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 CUL9Q8IWT3 2517 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 IZUMO1RA6ND01 250 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 SLC25A28Q96A46 364 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 ATP6V0BQ99437 205 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 DLL1O00548 723 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 STARD6P59095 220 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 TM4SF19Q96DZ7 209 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 MRGPRX3Q96LB0 322 aa10.13□□□□□ -0.79
SHROOM3-201ENST00000296043 hDV102S1A0JD36 115 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 ATP5LO75964 103 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 ZNF764Q96H86 408 aaPredicted RBP10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 IGHV1-69-2A0A0G2JMI3 117 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 SCTP09683 121 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 NPCDR1Q9BY65 106 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 TNFRSF19Q9NS68 423 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 GFERP55789 205 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 CXXC4Q9H2H0 198 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 IGHV3-48P01763 117 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 PRDX2P32119 198 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 PRR31Q5SQ13 230 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 ANKRD33Q7Z3H0 272 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 FAM181AQ8N9Y4 354 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 DSCR4P56555 118 aaPredicted RBP10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 DPTQ07507 201 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 KIR2DL4Q99706 377 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 K7N7A8 449 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 A0A1W2PQM1 296 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 HIGD1CA8MV81 97 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 MPDU1O75352 247 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 REG1AP05451 166 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 LCN12Q6JVE5 192 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 NPIPB6E9PJ23 425 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 DMRTC2Q8IXT2 367 aaPredicted RBP10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 C16orf92Q96LL3 132 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 ZNF488Q96MN9 340 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 GNRHR2Q96P88 292 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 TUBA4BQ9H853 241 aa10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 FOXD3Q9UJU5 478 aaPredicted RBP10.12□□□□□ -0.79
SHROOM3-201ENST00000296043 COL14A1Q05707 1796 aaKnown RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 SYNGR3O43761 229 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 ZGLP1P0C6A0 271 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 LCNL1Q6ZST4 164 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 PRSS41Q7RTY9 318 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 OR10J6PQ8NGY7 276 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 SPG11Q96JI7 2443 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 TMPRSS2O15393 492 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 C16orf47Q6ZP98 133 aaPredicted RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 SERGEFQ9UGK8 458 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 CA11O75493 328 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 C3AR1Q16581 482 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 CYP2G1PQ6ZSU1 146 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 DLX4Q92988 240 aaPredicted RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 SLC25A2Q9BXI2 301 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 SAA1P0DJI8 122 aaPredicted RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 C6orf15Q6UXA7 325 aaPredicted RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 BADQ92934 168 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 JMJD8Q96S16 334 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 KIAA1551Q9HCM1 1747 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 TRAV14DV4A0A0A6YYC5 116 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 TNFRSF1AP19438 455 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 SCNM1Q9BWG6 230 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 TSSC4Q9Y5U2 329 aaPredicted RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 ABCA3Q99758 1704 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 CT62P0C5K7 136 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 ZNF664Q8N3J9 261 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 RNASE7Q9H1E1 156 aaKnown RBP10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 NPVFQ9HCQ7 196 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 GGTLC2Q14390 218 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 S100A7L2Q5SY68 101 aa10.11□□□□□ -0.79
SHROOM3-201ENST00000296043 GPR132Q9UNW8 380 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms