RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 COX5BP10606 129 aa9.75□□□□□ -0.85
USP53-201ENST00000274030 SRIP30626 198 aa9.75□□□□□ -0.85
USP53-201ENST00000274030 HERPUD1Q15011 391 aa9.75□□□□□ -0.85
USP53-201ENST00000274030 C21orf62-AS1Q17RA5 79 aa9.75□□□□□ -0.85
USP53-201ENST00000274030 FAM216BQ8N7L0 139 aa9.75□□□□□ -0.85
USP53-201ENST00000274030 RAB37Q96AX2 223 aa9.75□□□□□ -0.85
USP53-201ENST00000274030 STRCP1A6NGW2 1772 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 LEPROTL1O95214 131 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 SPATA45Q537H7 98 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 SAXO1Q8IYX7 474 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 MUC21A0A0G2JKD1 596 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 MUC21A0A140T8X8 626 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 ZNF729A6NN14 1252 aaPredicted RBP9.74□□□□□ -0.85
USP53-201ENST00000274030 RPS11P62280 158 aaKnown RBP eCLIP9.74□□□□□ -0.85
USP53-201ENST00000274030 MUC21Q5SSG8 566 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 C10orf128Q5T292 105 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 SYT8Q8NBV8 401 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 TMEM45BQ96B21 275 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 FOXI3A8MTJ6 420 aaPredicted RBP9.74□□□□□ -0.85
USP53-201ENST00000274030 AMY1AP04745 511 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 RELQ04864 619 aaPredicted RBP9.74□□□□□ -0.85
USP53-201ENST00000274030 CCL19Q99731 98 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 PARLQ9H300 379 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 TET1Q8NFU7 2136 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 PTPRFP10586 1907 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 PLAURQ03405 335 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 ZNF385CQ66K41 422 aaPredicted RBP9.74□□□□□ -0.85
USP53-201ENST00000274030 DNM1P46Q6ZS02 220 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 TMEM186Q96B77 213 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 ATG101Q9BSB4 218 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 FBXL15Q9H469 300 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 ZNF708P17019 499 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 VWCEQ96DN2 955 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 DUX5Q96PT3 197 aa9.74□□□□□ -0.85
USP53-201ENST00000274030 COL11A2P13942 1736 aaPredicted RBP9.73□□□□□ -0.85
USP53-201ENST00000274030 C12orf77C9JDV5 145 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 NPIPB6E9PJ23 425 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 NPPCP23582 126 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 F11RQ9Y624 299 aaKnown RBP9.73□□□□□ -0.85
USP53-201ENST00000274030 FAM90A26D6RGX4 464 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 M0QZK8 103 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 GGCTO75223 188 aaKnown RBP9.73□□□□□ -0.85
USP53-201ENST00000274030 IGHMP01871 453 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 CSRP3P50461 194 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 HIST1H1AQ02539 215 aaPredicted RBP9.73□□□□□ -0.85
USP53-201ENST00000274030 ADIPOQQ15848 244 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 SPSB4Q96A44 273 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 ABHD17AQ96GS6 310 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 AICDAQ9GZX7 198 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 NPIPB11E5RHQ5 1161 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 MT-ND6P03923 174 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 CELA3BP08861 270 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 LINC00305Q7Z4B0 112 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 OR1P1Q8NH06 330 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 RAXQ9Y2V3 346 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 C9JCJ5 164 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 POC1AQ8NBT0 407 aa9.73□□□□□ -0.85
USP53-201ENST00000274030 ROS1P08922 2347 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 COL24A1Q17RW2 1714 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 HLA-DQA1P01909 254 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 IFITM2Q01629 132 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 LAMTOR1Q6IAA8 161 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 TMEM106BQ9NUM4 274 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 GCGP01275 180 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 SOD3P08294 240 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 LTBRP36941 435 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 MSGN1A6NI15 193 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 B9A039 149 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 NAT1P18440 290 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 PDLIM4P50479 330 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 DLX6P56179 175 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 OR4A47Q6IF82 309 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 ACP7Q6ZNF0 438 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 SMIM8Q96KF7 97 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 GLRXP35754 106 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 FOXA3P55318 350 aaPredicted RBP9.72□□□□□ -0.85
USP53-201ENST00000274030 ZNF56Q15929 161 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 MAP1LC3AQ9H492 121 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 RPRMQ9NS64 109 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 C7orf71A4D174 169 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 DANCRP0C864 163 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 APOBEC3AP31941 199 aaPredicted RBP9.72□□□□□ -0.85
USP53-201ENST00000274030 BSPH1Q075Z2 132 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 KLRB1Q12918 225 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 ICAM4Q14773 271 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 OR13A1Q8NGR1 328 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 RAX2Q96IS3 184 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 GPR82Q96P67 336 aa9.72□□□□□ -0.85
USP53-201ENST00000274030 C17orf98A8MV24 154 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 IFI6P09912 130 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 MESP1Q9BRJ9 268 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 THSD7AQ9UPZ6 1657 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 ADAMTS7Q9UKP4 1686 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 TRAV30A0A087WSZ9 112 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 MPTX1A8MV57 137 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 IFNL4K9M1U5 179 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 TRGV3P03979 118 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 TIMM23BQ5SRD1 257 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 DNLZQ5SXM8 178 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 ZCCHC24Q8N2G6 241 aaKnown RBP9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms