RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 BET1LQ9NYM9 111 aa11.4□□□□□ -0.58
SS18-201ENST00000269137 MINOS1-NBL1R4GNA1 71 aa11.4□□□□□ -0.58
SS18-201ENST00000269137 FAM24AA6NFZ4 105 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 LGALS7P47929 136 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 CAV2P51636 162 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 UBE2E1P51965 193 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 SPCS3P61009 180 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 UBA52P62987 128 aaKnown RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 PUSL1Q8N0Z8 303 aaKnown RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 TMEM252Q8N6L7 170 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 C1orf159Q96HA4 380 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 QTRT1Q9BXR0 403 aaKnown RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 RBKSQ9H477 322 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 FOXA2Q9Y261 457 aaPredicted RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 NBPF19A0A087WUL8 3843 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 A0A096LNT2 108 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 TRAV3A0A0B4J244 114 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 A0A1W2PPI3 338 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 C15orf61A6NNL5 157 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 OOSP1A8MZH6 123 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 UPK2O00526 184 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 LY86O95711 162 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 EWSR1Q01844 656 aaKnown RBP eCLIP11.39□□□□□ -0.59
SS18-201ENST00000269137 BAXQ07812 192 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 ALKAL2Q6UX46 152 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 MOB3BQ86TA1 216 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 STOML3Q8TAV4 291 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 CIB3Q96Q77 187 aaPredicted RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 ZNF471Q9BX82 626 aaPredicted RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 MS4A7Q9GZW8 240 aaPredicted RBP11.39□□□□□ -0.59
SS18-201ENST00000269137 LPAR2Q9HBW0 351 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 TMEM14BQ9NUH8 114 aa11.39□□□□□ -0.59
SS18-201ENST00000269137 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.39□□□□□ -0.591e-7■■■■□ 26.1
SS18-201ENST00000269137 IGSF23A1L1A6 192 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 SAA1P0DJI8 122 aaPredicted RBP11.38□□□□□ -0.59
SS18-201ENST00000269137 IAPPP10997 89 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 OR2B8PP59922 312 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 RPS16P62249 146 aaKnown RBP11.38□□□□□ -0.59
SS18-201ENST00000269137 HABP2Q14520 560 aaPredicted RBP11.38□□□□□ -0.59
SS18-201ENST00000269137 OR4A5Q8NH83 315 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 VSTM2AQ8TAG5 236 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 ST8SIA2Q92186 375 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 PSENENQ9NZ42 101 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 FBXL17Q9UF56 701 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 PRNDQ9UKY0 176 aa11.38□□□□□ -0.59
SS18-201ENST00000269137 TBL2Q9Y4P3 447 aaKnown RBP11.38□□□□□ -0.59
SS18-201ENST00000269137 FASNP49327 2511 aaKnown RBP11.38□□□□□ -0.59
SS18-201ENST00000269137 B4DSR2 109 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 IGLV2-23P01705 113 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 MSMBP08118 114 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 NHLH2Q02577 135 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 CCDC144NLQ6NUI1 221 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 DTD1Q8TEA8 209 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 RBMXL1Q96E39 390 aaKnown RBP11.37□□□□□ -0.59
SS18-201ENST00000269137 RNF5Q99942 180 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 ZNF257Q9Y2Q1 563 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 TET2Q6N021 2002 aaPredicted RBP11.37□□□□□ -0.59
SS18-201ENST00000269137 IGHV3-72A0A0B4J1Y9 119 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 KBTBD11O94819 623 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 SPDEFO95238 335 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 IFNA17P01571 189 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 NMBP08949 121 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 FGF2P09038 288 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 CD1BP29016 333 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 LGALS4P56470 323 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 HSPE1P61604 102 aaKnown RBP11.37□□□□□ -0.59
SS18-201ENST00000269137 AANATQ16613 207 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 TOR2AQ5JU69 321 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 PRSS57Q6UWY2 283 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 LHFPL4Q7Z7J7 247 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 TMEM167AQ8TBQ9 72 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 BSCL2Q96G97 398 aaPredicted RBP11.37□□□□□ -0.59
SS18-201ENST00000269137 MED9Q9NWA0 146 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 FKBP11Q9NYL4 201 aa11.37□□□□□ -0.59
SS18-201ENST00000269137 CEBPZOSA8MTT3 80 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 TIMM23O14925 209 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 JTBO76095 146 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 TPT1P13693 172 aaKnown RBP11.36□□□□□ -0.59
SS18-201ENST00000269137 SULT1A1P50225 295 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 EIF5AP63241 154 aaKnown RBP11.36□□□□□ -0.59
SS18-201ENST00000269137 LOXL1Q08397 574 aaPredicted RBP11.36□□□□□ -0.59
SS18-201ENST00000269137 VMA21Q3ZAQ7 101 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 HIST2H2BCQ6DN03 193 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 STX12Q86Y82 276 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 PDZD9Q8IXQ8 264 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 CFHR4Q92496 578 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 PHYHIPLQ96FC7 376 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 TCF19Q9Y242 345 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 HILPDAQ9Y5L2 63 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 CSMD2Q7Z408 3487 aa11.36□□□□□ -0.59
SS18-201ENST00000269137 CREBBPQ92793 2442 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 A0A1W2PRD5 423 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 A0A1W2PRF3 423 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 A0A1W2PRM7 423 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 H3BP45 60 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 RPL7L1Q6DKI1 246 aaKnown RBP11.35□□□□□ -0.59
SS18-201ENST00000269137 CLEC9AQ6UXN8 241 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 TMEM14EPQ6UXP3 125 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 BAP18Q8IXM2 172 aa11.35□□□□□ -0.59
SS18-201ENST00000269137 TEX45Q8NA69 505 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms