RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 BUB1B-PAK6H3BSN5 160 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 APOA2P02652 100 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 ATP6V0CP27449 155 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 C10orf55Q5SWW7 151 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 LY6G5BQ8NDX9 201 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 OR4P4Q8NGL7 312 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 TMEM186Q96B77 213 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 SMIM8Q96KF7 97 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 RSG1Q9BU20 258 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 PIGBOS1A0A0B4J2F0 54 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 IGHV2-5P01817 119 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 LILRB2Q8N423 598 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 OR5AN1Q8NGI8 311 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 FLYWCH2Q96CP2 140 aaKnown RBP13.35□□□□□ -0.27
USP4-201ENST00000265560 PHYHIPLQ96FC7 376 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 A0A087X0M5 115 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 A0A1B0GX30 115 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 E7EUB6 86 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 IFNA10P01566 189 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 TLE4Q04727 773 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 TMEM30BQ3MIR4 351 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 OR10W1Q8NGF6 305 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 CLCC1Q96S66 551 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 TCF19Q9Y242 345 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 INSIG2Q9Y5U4 225 aa13.35□□□□□ -0.27
USP4-201ENST00000265560 ZNF469Q96JG9 3925 aaPredicted RBP13.34□□□□□ -0.27
USP4-201ENST00000265560 SLC25A17O43808 307 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 FSTL3O95633 263 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 HRASP01112 189 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 GAPDHP04406 335 aaKnown RBP13.34□□□□□ -0.27
USP4-201ENST00000265560 KIR2DS2P43631 304 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 LMO4P61968 165 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 THNSL2Q86YJ6 484 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 BARX1Q9HBU1 254 aaPredicted RBP13.34□□□□□ -0.27
USP4-201ENST00000265560 FAM212BQ9NTI7 297 aaPredicted RBP13.34□□□□□ -0.27
USP4-201ENST00000265560 FBXO7Q9Y3I1 522 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 A0A1W2PPH5 198 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 RRHO14718 337 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 COX6B1P14854 86 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 PRRX1P54821 245 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 RNF141Q8WVD5 230 aa13.34□□□□□ -0.27
USP4-201ENST00000265560 KLF2Q9Y5W3 355 aaPredicted RBP13.34□□□□□ -0.27
USP4-201ENST00000265560 UBE2L5PA0A1B0GUS4 154 aa13.33□□□□□ -0.27
USP4-201ENST00000265560 PRH1P02810 166 aa13.33□□□□□ -0.27
USP4-201ENST00000265560 HOXA1P49639 335 aaPredicted RBP13.33□□□□□ -0.27
USP4-201ENST00000265560 VMO1Q7Z5L0 202 aa13.33□□□□□ -0.27
USP4-201ENST00000265560 C8orf46Q8TAG6 207 aa13.33□□□□□ -0.27
USP4-201ENST00000265560 RPEQ96AT9 228 aa13.33□□□□□ -0.27
USP4-201ENST00000265560 IGHV3OR16-10A0A075B7F0 116 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 IGHV4-61A0A0C4DH41 118 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 FAM157AC9JC47 383 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 MMP9P14780 707 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 SSX2Q16385 188 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 FBLN7Q53RD9 439 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 LINC00311Q8N616 119 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 SPOCK3Q9BQ16 436 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 REG4Q9BYZ8 158 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 STRAPQ9Y3F4 350 aaKnown RBP13.33□□□□□ -0.28
USP4-201ENST00000265560 OR51B2Q9Y5P1 312 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 SONP18583 2426 aaKnown RBP13.33□□□□□ -0.28
USP4-201ENST00000265560 hCG_1809904A0A1W2PP81 198 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 A0A1W2PPE2 198 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 A0A1W2PR64 198 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 A0A1W2PRV1 198 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 FAM90A26D6RGX4 464 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 S100A1P23297 94 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 SLC38A11Q08AI6 406 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 ZNF616Q08AN1 781 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 OR2G3Q8NGZ4 309 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 MS4A7Q9GZW8 240 aaPredicted RBP13.33□□□□□ -0.28
USP4-201ENST00000265560 TMEM231Q9H6L2 316 aa13.33□□□□□ -0.28
USP4-201ENST00000265560 IGHV4-30-2A0A087WSY4 118 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 C15orf61A6NNL5 157 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 RAB13P51153 203 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 AANATQ16613 207 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 PXDC1Q5TGL8 231 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 FAM168AQ92567 244 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 ATP5SQ99766 215 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 PFDN2Q9UHV9 154 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 IGHV1-3A0A0C4DH29 117 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 ARHGDIBP52566 201 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 SRSF3P84103 164 aaKnown RBP13.32□□□□□ -0.28
USP4-201ENST00000265560 TMEM14EPQ6UXP3 125 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 Q6ZRG5 221 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 FAM216AQ8WUB2 273 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 GINS3Q9BRX5 216 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 WASHC3Q9Y3C0 194 aa13.32□□□□□ -0.28
USP4-201ENST00000265560 PRRC2AP48634 2157 aaKnown RBP13.31□□□□□ -0.28
USP4-201ENST00000265560 BAXQ07812 192 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 ZNF266Q14584 549 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 HCP5Q6MZN7 132 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 MAPK1IP1LQ8NDC0 245 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 OR4C13Q8NGP0 309 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 ZNF596Q8TC21 504 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 TMEM170AQ8WVE7 144 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 C15orf62A8K5M9 175 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 SPP1P10451 314 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 SPCS3P61009 180 aa13.31□□□□□ -0.28
USP4-201ENST00000265560 EIF5AP63241 154 aaKnown RBP13.31□□□□□ -0.28
USP4-201ENST00000265560 ITGB1BP2Q9UKP3 347 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms