RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 LINC00312Q9Y6C7 94 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 CXorf65A6NEN9 183 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 M0QZK8 103 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 NPIPB7O75200 414 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 GGCTO75223 188 aaKnown RBP16.05■□□□□ 0.16
PTPRE-201ENST00000254667 AUP1Q9Y679 476 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 TRAV20A0A0B4J274 112 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 LHFPL5Q8TAF8 219 aa16.05■□□□□ 0.16
PTPRE-201ENST00000254667 REG1AP05451 166 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 SNRPCP09234 159 aaKnown RBP16.04■□□□□ 0.16
PTPRE-201ENST00000254667 PSMB2P49721 201 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 LBHQ53QV2 105 aaPredicted RBP16.04■□□□□ 0.16
PTPRE-201ENST00000254667 FBLN5Q9UBX5 448 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 GCGP01275 180 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 SRSF9Q13242 221 aaKnown RBP eCLIP16.04■□□□□ 0.16
PTPRE-201ENST00000254667 TRPM7Q96QT4 1865 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 A6NDN8 102 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 CA2P00918 260 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 CD59P13987 128 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 CKS2P33552 79 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 C17orf82Q86X59 251 aaPredicted RBP16.04■□□□□ 0.16
PTPRE-201ENST00000254667 FAM216BQ8N7L0 139 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 DCTN5Q9BTE1 182 aa16.04■□□□□ 0.16
PTPRE-201ENST00000254667 CD99P14209 185 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 CENPVQ7Z7K6 275 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-201ENST00000254667 OR13A1Q8NGR1 328 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 ZNF837Q96EG3 531 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-201ENST00000254667 LYPD3O95274 346 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 CCL1P22362 96 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 CA7P43166 264 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 TMEM177Q53S58 311 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 MTCL1Q9Y4B5 1905 aaKnown RBP16.03■□□□□ 0.16
PTPRE-201ENST00000254667 F12P00748 615 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-201ENST00000254667 CYP2G1PQ6ZSU1 146 aa16.03■□□□□ 0.16
PTPRE-201ENST00000254667 IFITM10A6NMD0 228 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 ANOS1P23352 680 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 CX3CL1P78423 397 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 WBP1Q96G27 269 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 PUSL1Q8N0Z8 303 aaKnown RBP16.02■□□□□ 0.16
PTPRE-201ENST00000254667 IFI27L2Q9H2X8 130 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 PHLDA3Q9Y5J5 127 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 ZDBF2Q9HCK1 2354 aa16.02■□□□□ 0.16
PTPRE-201ENST00000254667 A0A087X0M5 115 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 A0A1B0GX30 115 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 SNRPD3P62318 126 aaKnown RBP16.02■□□□□ 0.15
PTPRE-201ENST00000254667 C2orf68Q2NKX9 166 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 ZNF841Q6ZN19 808 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 OR11H4Q8NGC9 324 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 FAM168AQ92567 244 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 DIRC3C9JPN6 131 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 AMY1AP04745 511 aa16.02■□□□□ 0.15
PTPRE-201ENST00000254667 IL4P05112 153 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 SH3BGRL3Q9H299 93 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 KLK2P20151 261 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 CRYBB3P26998 211 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 GCHFRP30047 84 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 SAPCD1Q5SSQ6 148 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 FAM53AQ6NSI3 398 aaPredicted RBP16.01■□□□□ 0.15
PTPRE-201ENST00000254667 DEPPQ9NTK1 212 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 TMEM250H0YL14 139 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 NHLRC3Q5JS37 347 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 OR4B1Q8NGF8 309 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 GTF3AQ92664 365 aaKnown RBP16.01■□□□□ 0.15
PTPRE-201ENST00000254667 LOC389332A0A1B0GUA5 103 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 C5orf52A6NGY3 159 aa16.01■□□□□ 0.15
PTPRE-201ENST00000254667 A0A0G2JLM5 398 aa16■□□□□ 0.15
PTPRE-201ENST00000254667 PDCD11Q14690 1871 aaKnown RBP16■□□□□ 0.15
PTPRE-201ENST00000254667 OR4A47Q6IF82 309 aa16■□□□□ 0.15
PTPRE-201ENST00000254667 SDHCQ99643 169 aaPredicted RBP16■□□□□ 0.15
PTPRE-201ENST00000254667 SIAH2O43255 324 aa16■□□□□ 0.15
PTPRE-201ENST00000254667 HIST1H2BAQ96A08 127 aa16■□□□□ 0.15
PTPRE-201ENST00000254667 CBY1Q9Y3M2 126 aa16■□□□□ 0.15
PTPRE-201ENST00000254667 CGB1A6NKQ9 187 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 E9PLN8 166 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 TRGV3P03979 118 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 GPX1P07203 203 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 TRGC1P0CF51 173 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 AGAP20933 346 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 VN1R17PQ8TDU5 208 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 DUX5Q96PT3 197 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 VKORC1Q9BQB6 163 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 ATG101Q9BSB4 218 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 H0YL77 283 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 CELA3BP08861 270 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 IL6RP08887 468 aaPredicted RBP15.99■□□□□ 0.15
PTPRE-201ENST00000254667 LINC00271P0C7V0 271 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 MAP1LC3AQ9H492 121 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 TRBV9A0A0B4J1U6 114 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 DLX6P56179 175 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 PKIAP61925 76 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 LCN2P80188 198 aa15.99■□□□□ 0.15
PTPRE-201ENST00000254667 IGKV3D-15A0A087WSY6 115 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 SRSF12Q8WXF0 261 aaKnown RBP15.98■□□□□ 0.15
PTPRE-201ENST00000254667 NPCDR1Q9BY65 106 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 M0R3E3 92 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 AMMECR1LQ6DCA0 310 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 LINC00305Q7Z4B0 112 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 FBXL15Q9H469 300 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 C17orf98A8MV24 154 aa15.98■□□□□ 0.15
PTPRE-201ENST00000254667 FAM201AQ5SY85 155 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms