RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CT45A7P0DMV0 189 aa18.41■□□□□ 0.54
CDX1-201ENST00000231656 RELBQ01201 579 aa18.41■□□□□ 0.54
CDX1-201ENST00000231656 SLC38A11Q08AI6 406 aa18.41■□□□□ 0.54
CDX1-201ENST00000231656 MS4A7Q9GZW8 240 aaPredicted RBP18.41■□□□□ 0.54
CDX1-201ENST00000231656 CEBPZOSA8MTT3 80 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 AGPAT2O15120 278 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 APOC3P02656 99 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 ADCYAP1P18509 176 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 PDLIM3Q53GG5 364 aaPredicted RBP18.4■□□□□ 0.54
CDX1-201ENST00000231656 SPINK9Q5DT21 86 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 COMMD1Q8N668 190 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 OR4A16Q8NH70 328 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 CLDND2Q8NHS1 167 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 C8orf46Q8TAG6 207 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 PARD6GQ9BYG4 376 aaPredicted RBP18.4■□□□□ 0.54
CDX1-201ENST00000231656 TREM1Q9NP99 234 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 TRAV3A0A0B4J244 114 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 VWC2LB2RUY7 222 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 CD5P06127 495 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 LMO4P61968 165 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 LRRC75BQ2VPJ9 315 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 C10orf91Q5T1B1 145 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 THNSL2Q86YJ6 484 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 LILRB2Q8N423 598 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 C8orf31Q8N9H6 132 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 OR52E5Q8NH55 327 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 ZNF596Q8TC21 504 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 UQCC1Q9NVA1 299 aa18.4■□□□□ 0.54
CDX1-201ENST00000231656 BEX4Q9NWD9 120 aaPredicted RBP18.4■□□□□ 0.54
CDX1-201ENST00000231656 RNASEK-C17orf49H0YIS7 233 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 OR8U8P0C7N1 319 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 SNCAP37840 140 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 SPCS3P61009 180 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 POU2AF1Q16633 256 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 OR8G2PQ6IF36 304 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 SLC25A24Q6NUK1 477 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 SCGB1C1Q8TD33 95 aa18.39■□□□□ 0.53
CDX1-201ENST00000231656 UNC79Q9P2D8 2635 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 IGHV4-30-2A0A087WSY4 118 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 C22orf46C9J442 243 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 DSCR9P59020 149 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 DEFB113Q30KQ7 82 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 LINC00311Q8N616 119 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 LY6G5BQ8NDX9 201 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 RAB39BQ96DA2 213 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 SCRT1Q9BWW7 348 aa18.38■□□□□ 0.53
CDX1-201ENST00000231656 A0A087X0M5 115 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 PPIAL4CA0A0B4J2A2 164 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 A0A1B0GX30 115 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 IFNA17P01571 189 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 PPIAL4GP0DN37 164 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 OR4A47Q6IF82 309 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 ZNF429Q86V71 674 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 RHOVQ96L33 236 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 WDR61Q9GZS3 305 aaKnown RBP18.37■□□□□ 0.53
CDX1-201ENST00000231656 HECTD1Q9ULT8 2610 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 LOC105371242A0A075B767 164 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 LY86O95711 162 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 ARG1P05089 322 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 DVL1P1P54792 670 aaPredicted RBP18.37■□□□□ 0.53
CDX1-201ENST00000231656 PSMG3Q9BT73 122 aaPredicted RBP18.37■□□□□ 0.53
CDX1-201ENST00000231656 RSG1Q9BU20 258 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 FBXO7Q9Y3I1 522 aa18.37■□□□□ 0.53
CDX1-201ENST00000231656 C15orf61A6NNL5 157 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 C15orf62A8K5M9 175 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 FAM157AC9JC47 383 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 ZFP36P26651 326 aaKnown RBP18.36■□□□□ 0.53
CDX1-201ENST00000231656 VDAC2P45880 294 aaPredicted RBP18.36■□□□□ 0.53
CDX1-201ENST00000231656 ATP6V1FQ16864 119 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 CLEC12BQ2HXU8 276 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 AKR1C8PQ5T2L2 129 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 DHRS7BQ6IAN0 325 aaPredicted RBP18.36■□□□□ 0.53
CDX1-201ENST00000231656 ATRAIDQ6UW56 229 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 DPPA3Q6W0C5 159 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 C11orf42Q8N5U0 333 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 SLC35D1Q9NTN3 355 aa18.36■□□□□ 0.53
CDX1-201ENST00000231656 CARHSP1Q9Y2V2 147 aaKnown RBP18.36■□□□□ 0.53
CDX1-201ENST00000231656 WNK2Q9Y3S1 2297 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 A0A1W2PPH5 198 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 C9JQL5 133 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 J3QR06 171 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 HRASP01112 189 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 IL6RP08887 468 aaPredicted RBP18.35■□□□□ 0.53
CDX1-201ENST00000231656 DEFA5Q01523 94 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 RTL8BQ17RB0 113 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 LRRC75A-AS1Q8N1F1 130 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 RBMXL1Q96E39 390 aaKnown RBP18.35■□□□□ 0.53
CDX1-201ENST00000231656 MRPL20Q9BYC9 149 aaKnown RBP18.35■□□□□ 0.53
CDX1-201ENST00000231656 FOXA2Q9Y261 457 aaPredicted RBP18.35■□□□□ 0.53
CDX1-201ENST00000231656 CSMD1Q96PZ7 3565 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 ITPR2Q14571 2701 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 IGHV4-61A0A0C4DH41 118 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 UBE2L5PA0A1B0GUS4 154 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 LIPFP07098 398 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 IGHV1-8P0DP01 117 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 FAM71F2Q6NXP2 309 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 SPSB3Q6PJ21 355 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 OR13D1Q8NGV5 346 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 TMEM147Q9BVK8 224 aa18.35■□□□□ 0.53
CDX1-201ENST00000231656 HIPK2Q9H2X6 1198 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms