RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PSG5Q15238 335 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TM4SF20Q53R12 229 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF766Q5HY98 468 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM25Q86YD3 366 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 ZPLD1Q8TCW7 415 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 MSI2Q96DH6 328 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 C18orf12Q96KH6 178 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 FAM173AQ9BQD7 235 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 B4GALT6Q9UBX8 382 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 C19orf25Q9UFG5 118 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 A0A0J9YY10 115 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1B0GX78 115 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 FNDC10F2Z333 226 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 H3BVH4 76 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 F11P03951 625 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 PSG2P11465 335 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 FCGR2AP12318 317 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 REG1BP48304 166 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 ZP4Q12836 540 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 EIF3IQ13347 325 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 NYNRINQ9P2P1 1898 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 SSC5DA1L4H1 1573 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM14DPA8MWL7 114 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 LDB3O75112 727 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 ASAH2BP0C7U1 165 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 LGALS4P56470 323 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 RPS4XP62701 263 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 LINC01590Q5TEZ4 76 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM215Q68D42 235 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 SH2D6Q7Z4S9 175 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF721Q8TF20 911 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 VSIRQ9H7M9 311 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 NHP2Q9NX24 153 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 PAPPA2Q9BXP8 1791 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TRBV20-1A0A075B6N2 111 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 KIR2DS1A0A191URI9 304 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 SMIM9A6NGZ8 99 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 J3KT08 172 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TMPRSS2O15393 492 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 IL11P20809 199 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 KIR2DS1Q14954 304 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 PRR31Q5SQ13 230 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 DOK3Q7L591 496 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 STPG3Q8N7X2 389 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 CYB5D2Q8WUJ1 264 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 CNRIP1Q96F85 164 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM222Q9H0R3 208 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 RABAC1Q9UI14 185 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 TSC2P49815 1807 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF236Q9UL36 1845 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PRSS29PA6NIE9 313 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PTGESO14684 152 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 GATA3P23771 443 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF121P58317 390 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 RPS21P63220 83 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 WFDC2Q14508 124 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 LHX8Q68G74 356 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 C22orf39Q6P5X5 142 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 TBC1D26Q86UD7 250 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 LINC00346Q8IVM7 164 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SFXN3Q9BWM7 321 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SHANK3Q9BYB0 1731 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1W2PRD5 423 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1W2PRF3 423 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 A0A1W2PRM7 423 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 IGHV3-7P01780 117 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 IGFBP3P17936 291 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 MYBPHQ13203 477 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 C3AR1Q16581 482 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 TBR1Q16650 682 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 Q6ZUT4 128 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 Q6ZVL8 140 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PRSS41Q7RTY9 318 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 LSRQ86X29 649 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 RCHY1Q96PM5 261 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 GPX7Q96SL4 187 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SPANXB1Q9NS25 103 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SIT1Q9Y3P8 196 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 CSDC2Q9Y534 153 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 ABCA3Q99758 1704 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SMCHD1A6NHR9 2005 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PRR32B1ATL7 298 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 NAPSAO96009 420 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 MT-ATP8P03928 68 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SCGB1C2P0DMR2 95 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 CLDN17P56750 224 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 RPL18Q07020 188 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 RASL11AQ6T310 242 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 RBMXL3Q8N7X1 1067 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PBOV1Q9GZY1 135 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SPANXCQ9NY87 97 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SPTBP11277 2137 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM150CB9EJG8 249 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 CSRP1P21291 193 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 MRPS21P82921 87 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 DMRTC1Q5HYR2 192 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 FOXI2Q6ZQN5 318 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SPATA12Q7Z6I5 190 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF683Q8IZ20 524 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms