RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 AGRNO00468 2067 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 TRAV10A0A0B4J240 114 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 TSPAN4O14817 238 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 SHOXO15266 292 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 P0DMU3 169 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 FAM231AP0DMU4 169 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 FAM231CP0DMU5 169 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 GBX2P52951 348 aaPredicted RBP10.58□□□□□ -0.72
CLN3-249ENST00000636685 AWAT2Q6E213 333 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 Q6ZR54 194 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 JAGN1Q8N5M9 183 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 EDARADDQ8WWZ3 215 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 MARC2Q969Z3 335 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 LGALS12Q96DT0 336 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 FAAP24Q9BTP7 215 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 RNF126Q9BV68 326 aa10.58□□□□□ -0.72
CLN3-249ENST00000636685 MRPL27Q9P0M9 148 aaKnown RBP10.58□□□□□ -0.72
CLN3-249ENST00000636685 IGFBP3P17936 291 aaPredicted RBP10.57□□□□□ -0.72
CLN3-249ENST00000636685 C10orf55Q5SWW7 151 aa10.57□□□□□ -0.72
CLN3-249ENST00000636685 ZNF880Q6PDB4 577 aa10.57□□□□□ -0.72
CLN3-249ENST00000636685 C8orf59Q8N0T1 100 aaPredicted RBP10.57□□□□□ -0.72
CLN3-249ENST00000636685 SETD9Q8NE22 299 aa10.57□□□□□ -0.72
CLN3-249ENST00000636685 C6orf62Q9GZU0 229 aaPredicted RBP10.57□□□□□ -0.72
CLN3-249ENST00000636685 GABARAPL1Q9H0R8 117 aa10.57□□□□□ -0.72
CLN3-249ENST00000636685 HRH4Q9H3N8 390 aa10.57□□□□□ -0.72
CLN3-249ENST00000636685 CHMP1AQ9HD42 196 aaPredicted RBP10.57□□□□□ -0.72
CLN3-249ENST00000636685 MYCBP2O75592 4640 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 TRAV8-7A0A075B6U6 113 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 IGHV3-35A0A0C4DH35 117 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 GNAO1P09471 354 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 ADMP35318 185 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 SNRPGP62308 76 aaKnown RBP10.56□□□□□ -0.72
CLN3-249ENST00000636685 MRPL28Q13084 256 aaKnown RBP10.56□□□□□ -0.72
CLN3-249ENST00000636685 ZIK1Q3SY52 487 aaPredicted RBP10.56□□□□□ -0.72
CLN3-249ENST00000636685 SOHLH1Q5JUK2 328 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 GLT8D1Q68CQ7 371 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 XAF1Q6GPH4 301 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 C6orf201Q7Z4U5 140 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 TEX45Q8NA69 505 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 OR13C5Q8NGS8 318 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 PTX4Q96A99 478 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 SPIN2AQ99865 258 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 SPIN2BQ9BPZ2 258 aa10.56□□□□□ -0.72
CLN3-249ENST00000636685 RPL36Q9Y3U8 105 aaKnown RBP10.56□□□□□ -0.72
CLN3-249ENST00000636685 LOC100130705A0A1B0GUX0 176 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 CCDC160A6NGH7 325 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 HMX3A6NHT5 357 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 NAPSAO96009 420 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 ZBTB25P24278 435 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 UBE2KP61086 200 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 TAGLNQ01995 201 aaKnown RBP10.55□□□□□ -0.72
CLN3-249ENST00000636685 RBMY1FQ15415 496 aaKnown RBP10.55□□□□□ -0.72
CLN3-249ENST00000636685 VMA21Q3ZAQ7 101 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 GPR141Q7Z602 305 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 CEACAM19Q7Z692 300 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 Q8NAQ8 132 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 NEDD4LQ96PU5 975 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 GABARAPL3Q9BY60 117 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 ZNF430Q9H8G1 570 aaPredicted RBP10.55□□□□□ -0.72
CLN3-249ENST00000636685 IMPAD1Q9NX62 359 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 ERVK13-1Q9NX77 482 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 PTTG2Q9NZH5 202 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 AASSQ9UDR5 926 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 BLOC1S6Q9UL45 172 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 FAT1Q14517 4588 aa10.55□□□□□ -0.72
CLN3-249ENST00000636685 OR4C46A6NHA9 309 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 ZNF701M0R085 212 aaPredicted RBP10.54□□□□□ -0.72
CLN3-249ENST00000636685 CA1P00915 261 aaPredicted RBP10.54□□□□□ -0.72
CLN3-249ENST00000636685 AMBPP02760 352 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 RBMY1A1P0DJD3 496 aaKnown RBP10.54□□□□□ -0.72
CLN3-249ENST00000636685 RBMY1CP0DJD4 496 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 GALP22466 123 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 SLC25A42Q86VD7 318 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 EEF1AKMT3Q96AZ1 226 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 FANCD2OSQ96PS1 177 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 CHRDL1Q9BU40 450 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 RBM38Q9H0Z9 239 aaKnown RBP10.54□□□□□ -0.72
CLN3-249ENST00000636685 ZNF257Q9Y2Q1 563 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 UFC1Q9Y3C8 167 aa10.54□□□□□ -0.72
CLN3-249ENST00000636685 CLEC3BP05452 202 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 ELLP55199 621 aaPredicted RBP10.53□□□□□ -0.72
CLN3-249ENST00000636685 GABARAPL2P60520 117 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 HLA-DRB3P79483 266 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 TNP2Q05952 138 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 CBX3Q13185 183 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 TMEM187Q14656 261 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 C1orf134Q5TEV5 83 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 LAMTOR1Q6IAA8 161 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 ZNF773Q6PK81 442 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 Q6ZRM9 215 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.53□□□□□ -0.72
CLN3-249ENST00000636685 TRUB1Q8WWH5 349 aaKnown RBP10.53□□□□□ -0.72
CLN3-249ENST00000636685 C5orf30Q96GV9 206 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 SCRT1Q9BWW7 348 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 RSL24D1Q9UHA3 163 aaKnown RBP10.53□□□□□ -0.72
CLN3-249ENST00000636685 NACAE9PAV3 2078 aa10.53□□□□□ -0.72
CLN3-249ENST00000636685 IGHV4-28A0A0C4DH34 117 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 TEX22C9J3V5 150 aa10.52□□□□□ -0.73
CLN3-249ENST00000636685 MRPS14O60783 128 aaKnown RBP10.52□□□□□ -0.73
CLN3-249ENST00000636685 ACTL6BO94805 426 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms