RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 CASTOR1Q8WTX7 329 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 GPER1Q99527 375 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 KRTAP9-8Q9BYQ0 159 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 KRTAP4-9Q9BYQ8 210 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 PARP12Q9H0J9 701 aaKnown RBP3.31□□□□□ -1.88
SNCA-213ENST00000618500 SLC35D1Q9NTN3 355 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 TAS2R4Q9NYW5 299 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 FBXL17Q9UF56 701 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 HSF4Q9ULV5 492 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 ING4Q9UNL4 249 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 EXOSC1Q9Y3B2 195 aaKnown RBP3.31□□□□□ -1.88
SNCA-213ENST00000618500 A3GALT2U3KPV4 340 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 HERC1Q15751 4861 aa3.31□□□□□ -1.88
SNCA-213ENST00000618500 C15orf62A8K5M9 175 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 FOXI3A8MTJ6 420 aaPredicted RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 IGLL5B9A064 214 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 OGG1O15527 345 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 MRPS14O60783 128 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 NAT1P18440 290 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 RCC1P18754 421 aaPredicted RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 CELP19835 753 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 ODF4Q2M2E3 257 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 C15orf32Q32M92 178 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 PUSL1Q8N0Z8 303 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 ACBD7Q8N6N7 88 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 OR4K15Q8NH41 348 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 S100A13Q99584 98 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 C11orf54Q9H0W9 315 aaPredicted RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 ISG20L2Q9H9L3 353 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 SEPSECSQ9HD40 501 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 SCRT2Q9NQ03 307 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 ETV7Q9Y603 341 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 DNAH5Q8TE73 4624 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 MYCBP2O75592 4640 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 DAPL1A0PJW8 107 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 EPM2AB3EWF7 344 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 H7C2Y5 167 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 IGKV1-16P04430 117 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 CDK1P06493 297 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 ALDH3B2P48448 385 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 GBX2P52951 348 aaPredicted RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 TMEM187Q14656 261 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 ATP6AP1Q15904 470 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 TTC23Q5W5X9 447 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 BTNL8Q6UX41 500 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 LHFPL3Q86UP9 236 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 DEFB107AQ8IZN7 70 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 ACOT12Q8WYK0 555 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 BSCL2Q96G97 398 aaPredicted RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 GRAMD2BQ96HH9 432 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 C4orf36Q96KX1 117 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 HARBI1Q96MB7 349 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 PHB2Q99623 299 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 RNF167Q9H6Y7 350 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 DAZ1Q9NQZ3 744 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 AP5S1Q9NUS5 200 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 H3BNX3 289 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 DCTN3O75935 186 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 S1PR2O95136 353 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 RBMY1A1P0DJD3 496 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 RBMY1CP0DJD4 496 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 EDN2P20800 178 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 SERPINA2P20848 420 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 PTBP1P26599 531 aaKnown RBP eCLIP3.3□□□□□ -1.88
SNCA-213ENST00000618500 RBMY1FQ15415 496 aaKnown RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 HSD17B13Q7Z5P4 300 aaPredicted RBP3.3□□□□□ -1.88
SNCA-213ENST00000618500 C15orf53Q8NAA6 179 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 OR4A4PQ8NGN8 299 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 OR10K1Q8NGX5 313 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 VSTM2AQ8TAG5 236 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 TMEM167AQ8TBQ9 72 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 NEK7Q8TDX7 302 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 ABHD14BQ96IU4 210 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 FAM192AQ9GZU8 254 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 PEX16Q9Y5Y5 336 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 X6R8D5 127 aa3.3□□□□□ -1.88
SNCA-213ENST00000618500 MUC4Q99102 2169 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 A0A1W2PPQ1 181 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 SMIM9A6NGZ8 99 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 KRTAP29-1A8MX34 341 aaPredicted RBP3.29□□□□□ -1.88
SNCA-213ENST00000618500 H3BS24 57 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 GNGT2O14610 69 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 FKBP6O75344 327 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 SCGB1D2O95969 90 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 MGMTP16455 207 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 GNRHRP30968 328 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 YIF1BQ5BJH7 314 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 SERTAD4-AS1Q5TG53 156 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 CYP2R1Q6VVX0 501 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 TRPT1Q86TN4 253 aaKnown RBP3.29□□□□□ -1.88
SNCA-213ENST00000618500 PHYHIPQ92561 330 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 OR10C1Q96KK4 312 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 OR2A7Q96R45 310 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 Q9N2K0 584 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 FGF20Q9NP95 211 aaPredicted RBP3.29□□□□□ -1.88
SNCA-213ENST00000618500 V9GYY5 206 aaPredicted RBP3.29□□□□□ -1.88
SNCA-213ENST00000618500 DNAH8Q96JB1 4490 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 IGHV4-28A0A0C4DH34 117 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 IRGMA1A4Y4 181 aa3.29□□□□□ -1.88
SNCA-213ENST00000618500 PPP5D1E7EU14 171 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms