RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	TRDV1	A0A1B0GX56	115 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	HMX3	A6NHT5	357 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	IFNA6	P05013	189 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	ZNF45	Q02386	682 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	TBCE	Q15813	527 aa	Predicted RBP	13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	ADAMTSL5	Q6ZMM2	481 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	C19orf35	Q6ZS72	473 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	KCTD9	Q7L273	389 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552		Q8N402	240 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	OSR1	Q8TAX0	266 aa	Predicted RBP	13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	DYNLRB2	Q8TF09	96 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	FYTTD1	Q96QD9	318 aa	Known RBP	13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	VCX3B	Q9H321	246 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	NDUFB11	Q9NX14	153 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	BLOC1S6	Q9UL45	172 aa		13.36	□□□□□ -0.27
SHKBP1-223	ENST00000600552	DPPA5	A6NC42	116 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552		A8MZ25	164 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	PPP5D1	E7EU14	171 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	BMPR1B	O00238	502 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	OR2A4	O95047	310 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	IGHV3-23	P01764	117 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	HLA-A	P01891	365 aa	Known RBP	13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	CD81	P60033	236 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	RPL30	P62888	115 aa	Known RBP	13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	CDK10	Q15131	360 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	GUCA2B	Q16661	112 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	NR2C2AP	Q86WQ0	139 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	MMD2	Q8IY49	270 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	ZNF645	Q8N7E2	425 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	NUDCD2	Q8WVJ2	157 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	TCTEX1D2	Q8WW35	142 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	SPIN2A	Q99865	258 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	SPIN2B	Q9BPZ2	258 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	FAM110A	Q9BQ89	295 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	EDA2R	Q9HAV5	297 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	SPATA2	Q9UM82	520 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	PRELID3B	Q9Y3B1	194 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552		S4R3C0	116 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	RYR2	Q92736	4967 aa		13.35	□□□□□ -0.27
SHKBP1-223	ENST00000600552	LCE6A	A0A183	80 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	TMEM235	A6NFC5	223 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	FAM223B	A6NKX1	122 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	BRI3	O95415	125 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	DIRAS3	O95661	229 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	CD300E	Q496F6	205 aa	Predicted RBP	13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	FAM223A	Q8IWN6	122 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	GPHA2	Q96T91	129 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	MRPS7	Q9Y2R9	242 aa	Known RBP	13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	RBMX2	Q9Y388	322 aa	Known RBP	13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	OR2W1	Q9Y3N9	320 aa		13.34	□□□□□ -0.27
SHKBP1-223	ENST00000600552	IGKV1D-13	A0A0B4J2D9	117 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ERICH4	A6NGS2	130 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CREBL2	O60519	120 aa	Predicted RBP	13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	IGKV1-13	P0DP09	117 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CD36	P16671	472 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	EDN2	P20800	178 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	DTYMK	P23919	212 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	PSMB9	P28065	219 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	GNG2	P59768	71 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ARL6IP1	Q15041	203 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	C15orf32	Q32M92	178 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	HACD4	Q5VWC8	232 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SSX9	Q7RTT3	188 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	NEURL2	Q9BR09	285 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CENPO	Q9BU64	300 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	DAPK2	Q9UIK4	370 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	FBXL7	Q9UJT9	491 aa		13.33	□□□□□ -0.28
SHKBP1-223	ENST00000600552	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TPPP	O94811	219 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	OR2C1	O95371	312 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CTXN2	P0C2S0	81 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552		Q6ZS49	121 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TTC9C	Q8N5M4	171 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	DEFB125	Q8N687	156 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	NECAP1	Q8NC96	275 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	THAP7	Q9BT49	309 aa	Predicted RBP	13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	OR51E2	Q9H255	320 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SLC2A8	Q9NY64	477 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TAS2R8	Q9NYW2	309 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	RRP15	Q9Y3B9	282 aa	Known RBP	13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CEPT1	Q9Y6K0	416 aa		13.32	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TNFSF12	O43508	249 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	AIRE	O43918	545 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	HLA-DQB1	P01920	261 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	FCER2	P06734	321 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CD7	P09564	240 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	RPL27A	P46776	148 aa	Known RBP	13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	HSPA13	P48723	471 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CNIH2	Q6PI25	160 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SLC25A42	Q86VD7	318 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	OR4S2	Q8NH73	311 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	OR2A7	Q96R45	310 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	WFDC10A	Q9H1F0	79 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TXNL4B	Q9NX01	149 aa	Known RBP	13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SIGLEC8	Q9NYZ4	499 aa		13.31	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TRBV9	A0A0B4J1U6	114 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ZNF320	A2RRD8	509 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	NOTO	A8MTQ0	251 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	REG1A	P05451	166 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	PTHLH	P12272	177 aa		13.3	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms