RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OR5G3P0C626 314 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 Q6ZS49 121 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 LPAR2Q9HBW0 351 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 SLC25A6P12236 298 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 Q6P435 159 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 ACTR3CQ9C0K3 210 aaPredicted RBP12.83□□□□□ -0.36
UPF1-204ENST00000596842 CACNA1HO95180 2353 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 GRIFINA4D1Z8 144 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 SMPD2O60906 423 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 IL18BPO95998 194 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 COX5AP20674 150 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 MBD3L1Q8WWY6 194 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 LSM10Q969L4 123 aaKnown RBP12.83□□□□□ -0.36
UPF1-204ENST00000596842 PKDREJQ9NTG1 2253 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 C12orf77C9JDV5 145 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 HBZP02008 142 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 LDLRAD2Q5SZI1 272 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 TMEM45BQ96B21 275 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 POLDIP2Q9Y2S7 368 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 H0Y8G0 127 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 KBTBD11O94819 623 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 NDUFB4O95168 129 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 ATP5G3P48201 142 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 OR2T10Q8NGZ9 312 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.82□□□□□ -0.36
UPF1-204ENST00000596842 TRAV1-1A0A0B4J248 108 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 CYC1P08574 325 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 THBS3P49746 956 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 SUMO1P63165 101 aaKnown RBP12.82□□□□□ -0.36
UPF1-204ENST00000596842 ANKRD39Q53RE8 183 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 FAM122AQ96E09 287 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 PSMG3Q9BT73 122 aaPredicted RBP12.82□□□□□ -0.36
UPF1-204ENST00000596842 TTC28Q96AY4 2481 aa12.82□□□□□ -0.36
UPF1-204ENST00000596842 GNB2P62879 340 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 CATR1Q13166 79 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 TMEM183AQ8IXX5 376 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 NANOS1Q8WY41 292 aaKnown RBP12.81□□□□□ -0.36
UPF1-204ENST00000596842 RYDENQ9NUL5 291 aaKnown RBP12.81□□□□□ -0.36
UPF1-204ENST00000596842 GNG12Q9UBI6 72 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 FCGR3BO75015 233 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 ATP6V1FQ16864 119 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 DCAF10Q5QP82 559 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 ZNF497Q6ZNH5 498 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 SSMEM1Q8WWF3 244 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 AP1S3Q96PC3 154 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 TMEM147Q9BVK8 224 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 STRADBQ9C0K7 418 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 HEYLQ9NQ87 328 aaPredicted RBP12.81□□□□□ -0.36
UPF1-204ENST00000596842 METRNQ9UJH8 293 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 TNCP24821 2201 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 CTXND1A0A1B0GTU2 59 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 PMCHP20382 165 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 MRPL49Q13405 166 aaKnown RBP12.81□□□□□ -0.36
UPF1-204ENST00000596842 AARDQ4LEZ3 155 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 CYP2G1PQ6ZSU1 146 aa12.81□□□□□ -0.36
UPF1-204ENST00000596842 RNF212BA8MTL3 300 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 RPL19P84098 196 aaKnown RBP12.8□□□□□ -0.36
UPF1-204ENST00000596842 TMEM164Q5U3C3 297 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 TCF23Q7RTU1 214 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 SRD5A3Q9H8P0 318 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 TRBV24-1A0A075B6N3 115 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 IGKV3D-15A0A087WSY6 115 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 LRRC30A6NM36 301 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 GCGP01275 180 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 MPV17P39210 176 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 RND2P52198 227 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 NEIL1Q96FI4 390 aaPredicted RBP12.8□□□□□ -0.36
UPF1-204ENST00000596842 P2RX4Q99571 388 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 LINC00470Q9BZP3 86 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 TIMM8AO60220 97 aaPredicted RBP12.8□□□□□ -0.36
UPF1-204ENST00000596842 C1QTNF9P0C862 333 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 OR10J1P30954 320 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 FBXW9Q5XUX1 488 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 R3HDM4Q96D70 268 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 NUDT11Q96G61 164 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 NPCDR1Q9BY65 106 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 DUSP13Q9UII6 198 aa12.8□□□□□ -0.36
UPF1-204ENST00000596842 TMEM30CPA0ZSE6 113 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 TMEM183BQ1AE95 376 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 PDLIM3Q53GG5 364 aaPredicted RBP12.79□□□□□ -0.36
UPF1-204ENST00000596842 LEAP2Q969E1 77 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 HSPB9Q9BQS6 159 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 CTDSP1Q9GZU7 261 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 ARRDC1-AS1Q9H2J1 176 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 TRAPPC1Q9Y5R8 145 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 C9orf172C9J069 976 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 PSG7Q13046 419 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 PRAMEF5Q5TYX0 476 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 UNQ5815/PRO19632Q6UWF5 114 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 F6UZH7 168 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 HRASP01112 189 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 PFN1P07737 140 aaKnown RBP12.79□□□□□ -0.36
UPF1-204ENST00000596842 QTRT1Q9BXR0 403 aaKnown RBP12.79□□□□□ -0.36
UPF1-204ENST00000596842 LAMA5O15230 3695 aa12.79□□□□□ -0.36
UPF1-204ENST00000596842 HOXC12P31275 282 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 DHRS13Q6UX07 377 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 MOB1BQ7L9L4 216 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 ZNF645Q8N7E2 425 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 OR5R1Q8NH85 324 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 ZDHHC11Q9H8X9 412 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms