RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 ELOVL5Q9NYP7 299 aa12.39□□□□□ -0.43
SMARCA4-219ENST00000592604 PTPRBP23467 1997 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 ZNF891A8MT65 544 aaPredicted RBP12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 MPDU1O75352 247 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 RBMXL2O75526 392 aaKnown RBP12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 EGR1P18146 543 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 CST9LP1Q5W188 147 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 TEX38Q6PEX7 206 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 SLC25A40Q8TBP6 338 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 TRAV38-1A0A0B4J264 116 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 C1QTNF9P0C862 333 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 YPEL3P61236 119 aaPredicted RBP12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 SPINK9Q5DT21 86 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 GCSAMLQ5JQS6 135 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 C11orf53Q8IXP5 236 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 ZNF114Q8NC26 417 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 PRR7Q8TB68 274 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 SFRP2Q96HF1 295 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 DERL1Q9BUN8 251 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 PARD6AQ9NPB6 346 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 FAM186AA6NE01 2351 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 IGHV3-64DA0A0J9YX35 117 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 UBE2G2P60604 165 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 PSG7Q13046 419 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 VASH2Q86V25 355 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 TMEM256Q8N2U0 113 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 SGMS2Q8NHU3 365 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 QTRT1Q9BXR0 403 aaKnown RBP12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 GAL3ST2Q9H3Q3 398 aa12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 AURKAIP1Q9NWT8 199 aaPredicted RBP12.38□□□□□ -0.43
SMARCA4-219ENST00000592604 KIR2DL5BA0A0G2JN68 375 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 KIR2DL5BA0A0G2JPC4 375 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 A0A1W2PPV4 95 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 RBFOX2O43251 390 aaKnown RBP eCLIP12.37□□□□□ -0.433e-7■■□□□ 14.3
SMARCA4-219ENST00000592604 SELEP16581 610 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 OPRK1P41145 380 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 KIR2DL5AQ8N109 375 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 MRGPRDQ8TDS7 321 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 SNHG12Q9BXW3 62 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 FRYLO94915 3013 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 FREM2Q5SZK8 3169 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 FAM90A9PA6NNJ1 464 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 SCGB1D1O95968 90 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 Q6ZR03 302 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 NAGKQ9UJ70 344 aa12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 POLR3KQ9Y2Y1 108 aaPredicted RBP12.37□□□□□ -0.43
SMARCA4-219ENST00000592604 WNT9BO14905 357 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 NUPR1O60356 82 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 OR9G9P0C7N8 305 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 STAG3L2P0CL84 134 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 STAG3L3P0CL85 134 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 GCH1P30793 250 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 OR10J1P30954 320 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 LINC00205P59089 165 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 WFIKKN1Q96NZ8 548 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 TRBV20OR9-2A0A075B6H5 130 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 GABRA2P47869 451 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 MEOX1P50221 254 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 EDDM3BP56851 147 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 DCAF10Q5QP82 559 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 ACP7Q6ZNF0 438 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 LINC00696Q6ZRV3 163 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 TMEM105Q8N8V8 129 aa12.36□□□□□ -0.43
SMARCA4-219ENST00000592604 MDFIC2A0A1B0GVS7 189 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 PGPEP1LA6NFU8 196 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 SP1P08047 785 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 TMPRSS3P57727 454 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 FOXF2Q12947 444 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 GAGE1Q13065 139 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 TREML4Q6UXN2 200 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 ZNF826PQ6ZT77 177 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 MS4A10Q96PG2 267 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 HCFC1P51610 2035 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 IFNL4K9M1U5 179 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 UBE2NP61088 152 aaKnown RBP12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 SELENOTP62341 195 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 C1orf122Q6ZSJ8 110 aa12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 KLF13Q9Y2Y9 288 aaPredicted RBP12.35□□□□□ -0.43
SMARCA4-219ENST00000592604 A6NNC1 897 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 C9orf172C9J069 976 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 TMEM238C9JI98 176 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 PRSS46E5RG02 174 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 M0R143 59 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 TCF21O43680 179 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 TNFSF15O95150 251 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 BMP5P22003 454 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 ADMP35318 185 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 SSTR5P35346 364 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 OR13A1Q8NGR1 328 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 OR52E5Q8NH55 327 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 PATZ1Q9HBE1 687 aaKnown RBP12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 OBP2BQ9NPH6 170 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 PSG11Q9UQ72 335 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 MED13Q9UHV7 2174 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 TRAV9-1A0A075B6T8 112 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 A0A1B0GUS0 222 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 CXorf1O96002 111 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 ARL14EPLP0DKL9 152 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 KITLGP21583 273 aa12.34□□□□□ -0.43
SMARCA4-219ENST00000592604 TIMP3P35625 211 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms