RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 BAZ2BQ9UIF8 2168 aaKnown RBP1.1□□□□□ -2.23
SS18-214ENST00000580003 NUP160Q12769 1436 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 IGKV1-9A0A0C4DH69 117 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 STX10O60499 249 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 NEMFO60524 1076 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 ATP6V1G2O95670 118 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 DEFA4P12838 97 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 C9orf64Q5T6V5 341 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 DCXRQ7Z4W1 244 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 Q8N2B8 174 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 ZNF75CPQ92670 426 aaPredicted RBP1.09□□□□□ -2.23
SS18-214ENST00000580003 TMEM109Q9BVC6 243 aa1.09□□□□□ -2.23
SS18-214ENST00000580003 MICAL3Q7RTP6 2002 aa1.09□□□□□ -2.24
SS18-214ENST00000580003 DICER1Q9UPY3 1922 aaKnown RBP1.09□□□□□ -2.24
SS18-214ENST00000580003 H3BT86 120 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 CCRL2O00421 344 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 AZIN1O14977 448 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 ADAP1O75689 374 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 RAB14P61106 215 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 EBPQ15125 230 aaKnown RBP1.08□□□□□ -2.24
SS18-214ENST00000580003 C4orf26Q17RF5 130 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 HLA-DRB5Q30154 266 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 FAM173BQ6P4H8 233 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 SPERTQ8NA61 448 aa1.08□□□□□ -2.24
SS18-214ENST00000580003 HCRTO43612 131 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 CXCL2P19875 107 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 RPL28P46779 137 aaKnown RBP1.07□□□□□ -2.24
SS18-214ENST00000580003 ETV1P50549 477 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 LRRC26Q2I0M4 334 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 RASSF6Q6ZTQ3 369 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 GPHB5Q86YW7 130 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 RAB2BQ8WUD1 216 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 NSRP1Q9H0G5 558 aaKnown RBP1.07□□□□□ -2.24
SS18-214ENST00000580003 C22orf24Q9Y442 160 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 FLT4P35916 1363 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 LRPPRCP42704 1394 aaKnown RBP1.07□□□□□ -2.24
SS18-214ENST00000580003 ABCC12Q96J65 1359 aa1.07□□□□□ -2.24
SS18-214ENST00000580003 C5orf49A4QMS7 147 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 F8VZ95 297 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 MKRN2OSH3BPM6 223 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 SCN2BO60939 215 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 RD3LP0DJH9 198 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 CXCL3P19876 107 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 SLCO1A2P46721 670 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 PLPPR5Q32ZL2 321 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 SPATA24Q86W54 205 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 OR5L1Q8NGL2 311 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 CFAP45Q9UL16 551 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 A0A1W2PP64 1363 aa1.06□□□□□ -2.24
SS18-214ENST00000580003 CPAMD8Q8IZJ3 1885 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 TEX50A0A1B0GTY4 177 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 A0A1B0GW54 56 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 ATP8B1O43520 1251 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 PPBPP02775 128 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 TRGC1P0CF51 173 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 REG1BP48304 166 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 HLA-DRB3P79483 266 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 TIPINQ9BVW5 301 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 CHST6Q9GZX3 395 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 NAT8Q9UHE5 227 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 NAV1Q8NEY1 1877 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 RIMS2Q9UQ26 1411 aa1.05□□□□□ -2.24
SS18-214ENST00000580003 ZNF469Q96JG9 3925 aaPredicted RBP1.04□□□□□ -2.24
SS18-214ENST00000580003 SIPA1L1O43166 1804 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 TMED7-TICAM2A0A0A6YYA0 188 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 MEIS3P1A6NDR6 274 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 K7ERQ8 282 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 YKT6O15498 198 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 ANGPT1Q15389 498 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 BOD1L2Q8IYS8 172 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 RPP25LQ8N5L8 163 aaKnown RBP1.04□□□□□ -2.24
SS18-214ENST00000580003 CD300AQ9UGN4 299 aa1.04□□□□□ -2.24
SS18-214ENST00000580003 SCAF11Q99590 1463 aaKnown RBP1.04□□□□□ -2.24
SS18-214ENST00000580003 TMEM269A0A1B0GVZ9 245 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 OR51F1A6NGY5 319 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 TOX3O15405 576 aaPredicted RBP1.03□□□□□ -2.24
SS18-214ENST00000580003 NPPAP01160 153 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 ORM1P02763 201 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 ACSM3Q53FZ2 586 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 SLC37A2Q8TED4 501 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 OR52A5Q9H2C5 316 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 TP53TG1Q9Y2A0 90 aa1.03□□□□□ -2.24
SS18-214ENST00000580003 TECTAO75443 2155 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 RPS24P62847 133 aaKnown RBP1.02□□□□□ -2.25
SS18-214ENST00000580003 RIBC1Q8N443 379 aaPredicted RBP1.02□□□□□ -2.25
SS18-214ENST00000580003 ACOT12Q8WYK0 555 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 TESCQ96BS2 214 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 ANKRD36BP1Q96IX9 119 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 HES4Q9HCC6 221 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 TREM1Q9NP99 234 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 SNURFQ9Y675 71 aa1.02□□□□□ -2.25
SS18-214ENST00000580003 MUC5BQ9HC84 5762 aaPredicted RBP1.02□□□□□ -2.25
SS18-214ENST00000580003 BRWD1Q9NSI6 2320 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 POLEQ07864 2286 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 FTCDNL1E5RQL4 147 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 SMLR1H3BR10 107 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 IL6P05231 212 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 TFPTP0C1Z6 253 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 MSNP26038 577 aaKnown RBP1.01□□□□□ -2.25
SS18-214ENST00000580003 JOSD1Q15040 202 aaPredicted RBP1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms