RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZNF66Q6ZN08 573 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 MFSD4AQ8N468 514 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 POC5Q8NA72 575 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 OR5T1Q8NG75 326 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 OR4S2Q8NH73 311 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 SLC5A7Q9GZV3 580 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 IGHV3-11P01762 117 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 TRGV3P03979 118 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 PRSS3P35030 304 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 CTF1Q16619 201 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 C9orf66Q5T8R8 295 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 GIMAP1Q8WWP7 306 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 TMEM68Q96MH6 324 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 CMTM3Q96MX0 182 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 GPHA2Q96T91 129 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 PHB2Q99623 299 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 EHFQ9NZC4 300 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 ANAPC10Q9UM13 185 aa18.51■□□□□ 0.55
SHMT1-206ENST00000579558 SMIM31A0A1B0GVY4 71 aa18.5■□□□□ 0.55
SHMT1-206ENST00000579558 SEC14L6B5MCN3 397 aa18.5■□□□□ 0.55
SHMT1-206ENST00000579558 H3BUA1 57 aa18.5■□□□□ 0.55
SHMT1-206ENST00000579558 TNFSF12O43508 249 aa18.5■□□□□ 0.55
SHMT1-206ENST00000579558 CREBL2O60519 120 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-206ENST00000579558 ZBTB34Q8NCN2 500 aa18.5■□□□□ 0.55
SHMT1-206ENST00000579558 MSGN1A6NI15 193 aa18.49■□□□□ 0.55
SHMT1-206ENST00000579558 K7EIL1 84 aa18.49■□□□□ 0.55
SHMT1-206ENST00000579558 HPGDSO60760 199 aa18.49■□□□□ 0.55
SHMT1-206ENST00000579558 HERV-K104P61576 105 aa18.49■□□□□ 0.55
SHMT1-206ENST00000579558 TMEM17Q86X19 198 aa18.49■□□□□ 0.55
SHMT1-206ENST00000579558 SRSF12Q8WXF0 261 aaKnown RBP18.49■□□□□ 0.55
SHMT1-206ENST00000579558 ZNF430Q9H8G1 570 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-206ENST00000579558 ZMAT5Q9UDW3 170 aaKnown RBP18.49■□□□□ 0.55
SHMT1-206ENST00000579558 WI2-2373I1.2A0A1W2PRP0 233 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 LINC01619G3V211 115 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 ACTL6BO94805 426 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 PMP2P02689 132 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 APELAP0DMC3 54 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 NAT1P18440 290 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 KIR2DS2P43631 304 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 RFX2P48378 723 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 BRWD1-AS2P59051 145 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 TAS2R46P59540 309 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 MZT2AQ6P582 158 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 GPR141Q7Z602 305 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 MMD2Q8IY49 270 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 VKORC1L1Q8N0U8 176 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 OR5H2Q8NGV7 314 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 RHOVQ96L33 236 aa18.48■□□□□ 0.55
SHMT1-206ENST00000579558 TNCP24821 2201 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 IGHV4OR15-8A0A075B7B6 117 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 A0A087WW49 117 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 ELK1P19419 428 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 ALDH3B2P48448 385 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 SLURP1P55000 103 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 DGCR2P98153 550 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 DYRK1AQ13627 763 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 SNX29P2Q8IUI4 249 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 VSTM2AQ8TAG5 236 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 DCUN1D4Q92564 292 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 AP3S1Q92572 193 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 COA4Q9NYJ1 87 aa18.47■□□□□ 0.55
SHMT1-206ENST00000579558 C13orf42A0A1B0GVH6 325 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 MPPED1O15442 326 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 OR2A4O95047 310 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 CATR1Q13166 79 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 ZNF818PQ6ZRF7 136 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 GPX8Q8TED1 209 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 OR2A7Q96R45 310 aa18.46■□□□□ 0.55
SHMT1-206ENST00000579558 ZNF2Q9BSG1 426 aaPredicted RBP18.46■□□□□ 0.55
SHMT1-206ENST00000579558 A0A0G2JLM5 398 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 FAM25AB3EWG3 89 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 FAM25CB3EWG5 89 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 FAM25GB3EWG6 89 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 SULT1C2O00338 296 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 OVOL1O14753 267 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 KBTBD11O94819 623 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 HRASP01112 189 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 HSPB1P04792 205 aaKnown RBP18.45■□□□□ 0.54
SHMT1-206ENST00000579558 ZNF182P17025 639 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-206ENST00000579558 C10orf55Q5SWW7 151 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 DHRS11Q6UWP2 260 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 SPAG16Q8N0X2 631 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 DLX4Q92988 240 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-206ENST00000579558 TINAGL1Q9GZM7 467 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-206ENST00000579558 SCPEP1Q9HB40 452 aa18.45■□□□□ 0.54
SHMT1-206ENST00000579558 RAMP3O60896 148 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 OR9G9P0C7N8 305 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 HLA-DMAP28067 261 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 DEFB121Q5J5C9 76 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 SSX9Q7RTT3 188 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 PUSL1Q8N0Z8 303 aaKnown RBP18.44■□□□□ 0.54
SHMT1-206ENST00000579558 TMEM167AQ8TBQ9 72 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 BORCS5Q969J3 196 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 MOB3AQ96BX8 217 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 SPIN2AQ99865 258 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 SPIN2BQ9BPZ2 258 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 SCOCQ9UIL1 159 aa18.44■□□□□ 0.54
SHMT1-206ENST00000579558 BRI3O95415 125 aa18.43■□□□□ 0.54
SHMT1-206ENST00000579558 GNRHRP30968 328 aa18.43■□□□□ 0.54
SHMT1-206ENST00000579558 HRH1P35367 487 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms