RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RBMY1CP0DJD4 496 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 GBX2P52951 348 aaPredicted RBP13.07□□□□□ -0.32
CLK3-227ENST00000570296 CMC4P56277 68 aaPredicted RBP13.07□□□□□ -0.32
CLK3-227ENST00000570296 ZFP1Q6P2D0 407 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 LHFPL3Q86UP9 236 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 UBE2DNLQ8IWF7 75 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 IMPAD1Q9NX62 359 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 FLG2Q5D862 2391 aaPredicted RBP13.06□□□□□ -0.32
CLK3-227ENST00000570296 IGHV4-28A0A0C4DH34 117 aa13.06□□□□□ -0.32
CLK3-227ENST00000570296 IGFBP3P17936 291 aaPredicted RBP13.06□□□□□ -0.32
CLK3-227ENST00000570296 RTL8BQ17RB0 113 aa13.06□□□□□ -0.32
CLK3-227ENST00000570296 AWAT2Q6E213 333 aa13.06□□□□□ -0.32
CLK3-227ENST00000570296 IDO2Q6ZQW0 420 aa13.06□□□□□ -0.32
CLK3-227ENST00000570296 EXOGQ9Y2C4 368 aaKnown RBP13.06□□□□□ -0.32
CLK3-227ENST00000570296 S4R3C0 116 aa13.06□□□□□ -0.32
CLK3-227ENST00000570296 TRBV7-1A0A0A6YYK4 115 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 NPIPB5A8MRT5 1133 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 CLEC3BP05452 202 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 RRASP10301 218 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 MIFP14174 115 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 ZNF124Q15973 351 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 JAGN1Q8N5M9 183 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 FANCD2OSQ96PS1 177 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 NEDD4LQ96PU5 975 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 ZNF430Q9H8G1 570 aaPredicted RBP13.05□□□□□ -0.32
CLK3-227ENST00000570296 CHMP1AQ9HD42 196 aaPredicted RBP13.05□□□□□ -0.32
CLK3-227ENST00000570296 FAT1Q14517 4588 aa13.05□□□□□ -0.32
CLK3-227ENST00000570296 NACAE9PAV3 2078 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 ANKRD65E5RJM6 399 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 KLK9Q2XQG4 91 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 CEACAM19Q7Z692 300 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 SETD6Q8TBK2 473 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 TRUB1Q8WWH5 349 aaKnown RBP13.04□□□□□ -0.32
CLK3-227ENST00000570296 PYDC1Q8WXC3 89 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 TMEM190Q8WZ59 177 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 FAAP24Q9BTP7 215 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 CHRDL1Q9BU40 450 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 ZNF436Q9C0F3 470 aaPredicted RBP13.04□□□□□ -0.32
CLK3-227ENST00000570296 DAZ1Q9NQZ3 744 aaKnown RBP13.04□□□□□ -0.32
CLK3-227ENST00000570296 CKLFQ9UBR5 152 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 KLK9Q9UKQ9 250 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 VPS13BQ7Z7G8 4022 aa13.04□□□□□ -0.32
CLK3-227ENST00000570296 C15orf61A6NNL5 157 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 MRPS14O60783 128 aaKnown RBP13.03□□□□□ -0.32
CLK3-227ENST00000570296 DHFRP00374 187 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 POLR2IP36954 125 aaKnown RBP13.03□□□□□ -0.32
CLK3-227ENST00000570296 C10orf55Q5SWW7 151 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 C19orf35Q6ZS72 473 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 ZNF367Q7RTV3 350 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 MMD2Q8IY49 270 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 ORAI1Q96D31 301 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 LGALS12Q96DT0 336 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 CIB1Q99828 191 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 GABARAPL1Q9H0R8 117 aa13.03□□□□□ -0.32
CLK3-227ENST00000570296 TRBV6-6A0A0A6YYG2 114 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 DPPA5A6NC42 116 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 TEX22C9J3V5 150 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 G3V2T6 193 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 CTSDP07339 412 aaPredicted RBP13.02□□□□□ -0.33
CLK3-227ENST00000570296 HIST1H1BP16401 226 aaKnown RBP13.02□□□□□ -0.33
CLK3-227ENST00000570296 GTF2A1P52655 376 aaPredicted RBP13.02□□□□□ -0.33
CLK3-227ENST00000570296 TPBGQ13641 420 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 ATP6AP1Q15904 470 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 RNF212Q495C1 297 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 MEDAGQ5VYS4 303 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 CDH26Q8IXH8 852 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 CXorf58Q96LI9 332 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 FYTTD1Q96QD9 318 aaKnown RBP13.02□□□□□ -0.33
CLK3-227ENST00000570296 GABARAPL3Q9BY60 117 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 MGAT4AQ9UM21 535 aa13.02□□□□□ -0.33
CLK3-227ENST00000570296 ELOA3CA0A087WX78 387 aaPredicted RBP13.01□□□□□ -0.33
CLK3-227ENST00000570296 HMX3A6NHT5 357 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 HLA-DRB3P79483 266 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 CDK10Q15131 360 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 RPL22L1Q6P5R6 122 aaKnown RBP13.01□□□□□ -0.33
CLK3-227ENST00000570296 C6orf201Q7Z4U5 140 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 AMIGO2Q86SJ2 522 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 OSR1Q8TAX0 266 aaPredicted RBP13.01□□□□□ -0.33
CLK3-227ENST00000570296 RIMS4Q9H426 269 aaPredicted RBP13.01□□□□□ -0.33
CLK3-227ENST00000570296 S100A14Q9HCY8 104 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 ERVK13-1Q9NX77 482 aa13.01□□□□□ -0.33
CLK3-227ENST00000570296 IGHV3-35A0A0C4DH35 117 aa13□□□□□ -0.33
CLK3-227ENST00000570296 SNTNA6NMZ2 147 aa13□□□□□ -0.33
CLK3-227ENST00000570296 CRYGCP07315 174 aa13□□□□□ -0.33
CLK3-227ENST00000570296 GPR183P32249 361 aa13□□□□□ -0.33
CLK3-227ENST00000570296 C12orf74Q32Q52 190 aa13□□□□□ -0.33
CLK3-227ENST00000570296 CCDC58Q4VC31 144 aa13□□□□□ -0.33
CLK3-227ENST00000570296 LIPKQ5VXJ0 399 aa13□□□□□ -0.33
CLK3-227ENST00000570296 PLET1Q6UQ28 207 aa13□□□□□ -0.33
CLK3-227ENST00000570296 CENPNQ96H22 339 aaPredicted RBP13□□□□□ -0.33
CLK3-227ENST00000570296 SLC2A9Q9NRM0 540 aa13□□□□□ -0.33
CLK3-227ENST00000570296 SDHAF2Q9NX18 166 aa13□□□□□ -0.33
CLK3-227ENST00000570296 RDH8Q9NYR8 311 aa13□□□□□ -0.33
CLK3-227ENST00000570296 TRAV8-7A0A075B6U6 113 aa12.99□□□□□ -0.33
CLK3-227ENST00000570296 MFSD2BA6NFX1 497 aa12.99□□□□□ -0.33
CLK3-227ENST00000570296 CRYZL1O95825 349 aa12.99□□□□□ -0.33
CLK3-227ENST00000570296 SAA1P0DJI8 122 aaPredicted RBP12.99□□□□□ -0.33
CLK3-227ENST00000570296 IRF3Q14653 427 aa12.99□□□□□ -0.33
CLK3-227ENST00000570296 OR2D2Q9H210 308 aa12.99□□□□□ -0.33
CLK3-227ENST00000570296 ZNF705EA8MWA4 302 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms