RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 RBMS3Q6XE24 437 aaKnown RBP7.31□□□□□ -1.24
LINC00558-201ENST00000569422 H2BFWTQ7Z2G1 175 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 RAB1CQ92928 201 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 LSM10Q969L4 123 aaKnown RBP7.31□□□□□ -1.24
LINC00558-201ENST00000569422 MEGF10Q96KG7 1140 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 RHOVQ96L33 236 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 FCGR3BO75015 233 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 IFNA17P01571 189 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 MT-ND4LP03901 98 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 MMP9P14780 707 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 RPS23P62266 143 aaKnown RBP7.31□□□□□ -1.24
LINC00558-201ENST00000569422 SEM1Q6ZVN7 128 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 CLDND2Q8NHS1 167 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 CORO2AQ92828 525 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 NIPSNAP3BQ9BS92 247 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 SLC25A22Q9H936 323 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 LPAR2Q9HBW0 351 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 ZNF71Q9NQZ8 489 aaPredicted RBP7.31□□□□□ -1.24
LINC00558-201ENST00000569422 PGPEP1Q9NXJ5 209 aa7.31□□□□□ -1.24
LINC00558-201ENST00000569422 SMCO3A2RU48 225 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 RNF212BA8MTL3 300 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 FABP9Q0Z7S8 132 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 CATR1Q13166 79 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 ZNF726P1Q15940 193 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 UTF1Q5T230 341 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 OR2V2Q96R30 315 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 HELTA6NFD8 242 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 M0QZK8 103 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 SPINT2O43291 252 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 COX5AP20674 150 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 BRWD1-AS2P59051 145 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 CLEC12BQ2HXU8 276 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 RPL39P5Q59GN2 51 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 NCR3LG1Q68D85 454 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 LHX4Q969G2 390 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 SLC39A9Q9NUM3 307 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 TNFRSF18Q9Y5U5 241 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 NPIPB11E5RHQ5 1161 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 KLK10O43240 276 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 SOX15O60248 233 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 HBE1P02100 147 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 CD82P27701 267 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 GPR12P47775 334 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 FAM27E3Q08E93 113 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 MSMO1Q15800 293 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 NCMAPQ5T1S8 102 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 SLC35E4Q6ICL7 350 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 DUX4L9Q6RFH8 374 aaPredicted RBP7.3□□□□□ -1.24
LINC00558-201ENST00000569422 RCC1LQ96I51 464 aaKnown RBP7.3□□□□□ -1.24
LINC00558-201ENST00000569422 HES4Q9HCC6 221 aa7.3□□□□□ -1.24
LINC00558-201ENST00000569422 MAP1LC3B2A6NCE7 125 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 LRRC30A6NM36 301 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 M0R1X1 148 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 IGKV1D-33P01593 117 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 IGKV1-33P01594 117 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 MDKP21741 143 aaPredicted RBP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 LMO1P25800 156 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 TFF3Q07654 80 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 RHEBQ15382 184 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 GUSBP1Q15486 140 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 ZNF474Q6S9Z5 364 aaPredicted RBP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 TAF15Q92804 592 aaKnown RBP eCLIP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 MAP1LC3BQ9GZQ8 125 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 WDR61Q9GZS3 305 aaKnown RBP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 CSTL1Q9H114 145 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 PLCE1Q9P212 2302 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 IGKV1D-17A0A075B6S4 117 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 CRYAAP02489 173 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 FGF7P21781 194 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 CD200P41217 278 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 LRRC75BQ2VPJ9 315 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 C22orf34Q6ZV56 151 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 ZCCHC24Q8N2G6 241 aaKnown RBP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 GATAD1Q8WUU5 269 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 ITLN1Q8WWA0 313 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 MISP3Q96FF7 219 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 SDSLQ96GA7 329 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 QTRT1Q9BXR0 403 aaKnown RBP7.29□□□□□ -1.24
LINC00558-201ENST00000569422 PKDREJQ9NTG1 2253 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 APC2O95996 2303 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 CEP295Q9C0D2 2601 aa7.29□□□□□ -1.24
LINC00558-201ENST00000569422 ANKRD11Q6UB99 2663 aaPredicted RBP7.28□□□□□ -1.24
LINC00558-201ENST00000569422 TGIF2-C20orf24A0A0A6YYL0 155 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 F8WDY8 70 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 DLEU1O43261 78 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 PPBPP02775 128 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 SLC25A6P12236 298 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 ERVFRD-1P60508 538 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 C5orf64Q2M2E5 130 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 TGIF2LYQ8IUE0 185 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 NECAP1Q8NC96 275 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 OR10P1Q8NGE3 313 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 RPUSD4Q96CM3 377 aaKnown RBP7.28□□□□□ -1.24
LINC00558-201ENST00000569422 MUCL1Q96DR8 90 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 TVP23CQ96ET8 276 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 HIPK2Q9H2X6 1198 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 RELNP78509 3460 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 POLEQ07864 2286 aa7.28□□□□□ -1.24
LINC00558-201ENST00000569422 ZNF292O60281 2723 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms