RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	ATP5G2	Q06055	141 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	CDK10	Q15131	360 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	IDO2	Q6ZQW0	420 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	SLC25A42	Q86VD7	318 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	LAX1	Q8IWV1	398 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	MMD2	Q8IY49	270 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	ZNF645	Q8N7E2	425 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	NECAP1	Q8NC96	275 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	PRELID3B	Q9Y3B1	194 aa		12.81	□□□□□ -0.36
CLN3-231	ENST00000568422	TRBV9	A0A0B4J1U6	114 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	SHISA3	A0PJX4	238 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	RBMXL2	O75526	392 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	TUSC2	O75896	110 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	SAA1	P0DJI8	122 aa	Predicted RBP	12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	CD36	P16671	472 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	HSPA13	P48723	471 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	DEFA5	Q01523	94 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	ZFAND6	Q6FIF0	208 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	TTC9C	Q8N5M4	171 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	KCTD12	Q96CX2	325 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	DCUN1D5	Q9BTE7	237 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	ATG5	Q9H1Y0	275 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	DCSTAMP	Q9H295	470 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	ZNF430	Q9H8G1	570 aa	Predicted RBP	12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	AKIP1	Q9NQ31	210 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	ADAM30	Q9UKF2	790 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	MRPS7	Q9Y2R9	242 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	OR2W1	Q9Y3N9	320 aa		12.8	□□□□□ -0.36
CLN3-231	ENST00000568422	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	12.79	□□□□□ -0.36
CLN3-231	ENST00000568422	EXOSC2	Q13868	293 aa	Known RBP	12.79	□□□□□ -0.36
CLN3-231	ENST00000568422	KCTD9	Q7L273	389 aa		12.79	□□□□□ -0.36
CLN3-231	ENST00000568422	IGKV1D-8	A0A087WSZ0	117 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	BMPR1B	O00238	502 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	FCGR3B	O75015	233 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	SCGN	O76038	276 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	HLA-DQB1	P01920	261 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	CDNF	Q49AH0	187 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	HACD4	Q5VWC8	232 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	VSTM2A	Q8TAG5	236 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	HSD17B10	Q99714	261 aa	Known RBP	12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	ST6GALNAC5	Q9BVH7	336 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	ZNF257	Q9Y2Q1	563 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	LYST	Q99698	3801 aa		12.78	□□□□□ -0.36
CLN3-231	ENST00000568422	IZUMO1R	A6ND01	250 aa		12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	ZNF45	Q02386	682 aa		12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	C22orf42	Q6IC83	251 aa		12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	OR51E2	Q9H255	320 aa		12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	SLC2A8	Q9NY64	477 aa		12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	RBMX2	Q9Y388	322 aa	Known RBP	12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	SACS	Q9NZJ4	4579 aa		12.77	□□□□□ -0.37
CLN3-231	ENST00000568422	NOTO	A8MTQ0	251 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	MRPS14	O60783	128 aa	Known RBP	12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	TPPP	O94811	219 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	PRH1	P02810	166 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	FGF9	P31371	208 aa	Predicted RBP	12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	MAS1L	P35410	378 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	C15orf32	Q32M92	178 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	CNIH2	Q6PI25	160 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	LINC00322	Q6ZN03	302 aa	Predicted RBP	12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	NR2C2AP	Q86WQ0	139 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	OR4S2	Q8NH73	311 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	IL17D	Q8TAD2	202 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	CNBD2	Q96M20	576 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	ELF5	Q9UKW6	265 aa	Predicted RBP	12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	CEPT1	Q9Y6K0	416 aa		12.76	□□□□□ -0.37
CLN3-231	ENST00000568422	STARD9	Q9P2P6	4700 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	NPIPB5	A8MRT5	1133 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	LGALS9	O00182	355 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	GGCT	O75223	188 aa	Known RBP	12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	IGLV2-14	P01704	120 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	NFYA	P23511	347 aa	Predicted RBP	12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	CD81	P60033	236 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	CD300E	Q496F6	205 aa	Predicted RBP	12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	IZUMO2	Q6UXV1	221 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	TPRA1	Q86W33	373 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	DYNLRB2	Q8TF09	96 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	OR2A7	Q96R45	310 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	NEURL2	Q9BR09	285 aa		12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	TECR	Q9NZ01	308 aa	Known RBP	12.75	□□□□□ -0.37
CLN3-231	ENST00000568422	DPPA5	A6NC42	116 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422		J3QRK9	145 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	KBTBD11	O94819	623 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	DHFR	P00374	187 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	KIR2DS2	P43631	304 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	GABARAPL2	P60520	117 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	RPL30	P62888	115 aa	Known RBP	12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	DEFB114	Q30KQ6	69 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	OR2B11	Q5JQS5	317 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	C10orf55	Q5SWW7	151 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	ADAMTSL5	Q6ZMM2	481 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	TMEM167A	Q8TBQ9	72 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	AIFM2	Q9BRQ8	373 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	PLEKHA3	Q9HB20	300 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	ZC4H2	Q9NQZ6	224 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	SLC2A9	Q9NRM0	540 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	ANXA10	Q9UJ72	324 aa		12.74	□□□□□ -0.37
CLN3-231	ENST00000568422	ZNF785	A8K8V0	405 aa		12.73	□□□□□ -0.37
CLN3-231	ENST00000568422	TEX22	C9J3V5	150 aa		12.73	□□□□□ -0.37
CLN3-231	ENST00000568422	OR2J3	O76001	311 aa		12.73	□□□□□ -0.37
CLN3-231	ENST00000568422	HRAS	P01112	189 aa		12.73	□□□□□ -0.37

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