RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MYCBPQ99417 103 aaPredicted RBP8.57□□□□□ -1.04
CLK3-222ENST00000568232 SLC29A1Q99808 456 aa8.57□□□□□ -1.04
CLK3-222ENST00000568232 ERVK13-1Q9NX77 482 aa8.57□□□□□ -1.04
CLK3-222ENST00000568232 ZNF221Q9UK13 617 aa8.57□□□□□ -1.04
CLK3-222ENST00000568232 DNAH5Q8TE73 4624 aa8.57□□□□□ -1.04
CLK3-222ENST00000568232 IGLV2-18A0A075B6J9 118 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 IGHV3-35A0A0C4DH35 117 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 SMIM31A0A1B0GVY4 71 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 HMX3A6NHT5 357 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 MPTX1A8MV57 137 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 EI24O14681 340 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 SCTP09683 121 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 ZBTB25P24278 435 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 HLA-DMBP28068 263 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 MAP2K4P45985 399 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 LGALS9BQ3B8N2 356 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 PVRIGQ6DKI7 326 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 OR4A47Q6IF82 309 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 ZNF880Q6PDB4 577 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 Q6ZTC4 211 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 MRPL48Q96GC5 212 aaKnown RBP8.56□□□□□ -1.04
CLK3-222ENST00000568232 GABARAPL3Q9BY60 117 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 C5orf66Q9H5L9 145 aa8.56□□□□□ -1.04
CLK3-222ENST00000568232 CHMP1AQ9HD42 196 aaPredicted RBP8.56□□□□□ -1.04
CLK3-222ENST00000568232 MRPL27Q9P0M9 148 aaKnown RBP8.56□□□□□ -1.04
CLK3-222ENST00000568232 A0A1W2PPK0 400 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 TSPAN4O14817 238 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 NAPSAO96009 420 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 RPL5P46777 297 aaKnown RBP8.55□□□□□ -1.04
CLK3-222ENST00000568232 SNRPGP62308 76 aaKnown RBP8.55□□□□□ -1.04
CLK3-222ENST00000568232 MRPL28Q13084 256 aaKnown RBP8.55□□□□□ -1.04
CLK3-222ENST00000568232 TTC23Q5W5X9 447 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 CEACAM19Q7Z692 300 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 CBR4Q8N4T8 237 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 TEX45Q8NA69 505 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 SETD9Q8NE22 299 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 PTX4Q96A99 478 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 MRPS26Q9BYN8 205 aaKnown RBP8.55□□□□□ -1.04
CLK3-222ENST00000568232 IMPAD1Q9NX62 359 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 SMPD3Q9NY59 655 aaPredicted RBP8.55□□□□□ -1.04
CLK3-222ENST00000568232 ORC6Q9Y5N6 252 aa8.55□□□□□ -1.04
CLK3-222ENST00000568232 TRAV10A0A0B4J240 114 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 ALPLP05186 524 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 P0DMU3 169 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 FAM231AP0DMU4 169 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 FAM231CP0DMU5 169 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 Q6ZR54 194 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 NR2C2APQ86WQ0 139 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 DHRSXQ8N5I4 330 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 TRUB1Q8WWH5 349 aaKnown RBP8.54□□□□□ -1.04
CLK3-222ENST00000568232 MARC2Q969Z3 335 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 C5orf30Q96GV9 206 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 FANCD2OSQ96PS1 177 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 NEDD4LQ96PU5 975 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 HDHD3Q9BSH5 251 aaPredicted RBP8.54□□□□□ -1.04
CLK3-222ENST00000568232 CHRDL1Q9BU40 450 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 SSBP4Q9BWG4 385 aaPredicted RBP8.54□□□□□ -1.04
CLK3-222ENST00000568232 SCRT1Q9BWW7 348 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 ZNF430Q9H8G1 570 aaPredicted RBP8.54□□□□□ -1.04
CLK3-222ENST00000568232 AMBNQ9NP70 447 aa8.54□□□□□ -1.04
CLK3-222ENST00000568232 IGKV1-6A0A0C4DH72 117 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 DPPA5A6NC42 116 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 CLEC3BP05452 202 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 RBMY1A1P0DJD3 496 aaKnown RBP8.53□□□□□ -1.04
CLK3-222ENST00000568232 RBMY1CP0DJD4 496 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 RPA2P15927 270 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 UBE2KP61086 200 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 RBMY1FQ15415 496 aaKnown RBP8.53□□□□□ -1.04
CLK3-222ENST00000568232 ZIK1Q3SY52 487 aaPredicted RBP8.53□□□□□ -1.04
CLK3-222ENST00000568232 VMA21Q3ZAQ7 101 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 KCTD21Q4G0X4 260 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 OR10K2Q6IF99 312 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 RPL22L1Q6P5R6 122 aaKnown RBP8.53□□□□□ -1.04
CLK3-222ENST00000568232 Q8NAQ8 132 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 CNBD2Q96M20 576 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 SPIN2AQ99865 258 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 SPIN2BQ9BPZ2 258 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 RNF126Q9BV68 326 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 HRH4Q9H3N8 390 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 SDHAF2Q9NX18 166 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 RDH8Q9NYR8 311 aa8.53□□□□□ -1.04
CLK3-222ENST00000568232 DMBT1Q9UGM3 2413 aaPredicted RBP8.53□□□□□ -1.04
CLK3-222ENST00000568232 A0A087WXM4 84 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 TRBV5-5A0A0J9YX44 114 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 MFSD2BA6NFX1 497 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 TEX22C9J3V5 150 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 E7EUB6 86 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 CA1P00915 261 aaPredicted RBP8.52□□□□□ -1.05
CLK3-222ENST00000568232 HTR2CP28335 458 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 ADMP35318 185 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 HLA-DRB3P79483 266 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 MEDAGQ5VYS4 303 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 ZNF767PQ75MW2 155 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 ZNF555Q8NEP9 628 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 EEF1AKMT3Q96AZ1 226 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 DGCR14Q96DF8 476 aaKnown RBP8.52□□□□□ -1.05
CLK3-222ENST00000568232 C6orf62Q9GZU0 229 aaPredicted RBP8.52□□□□□ -1.05
CLK3-222ENST00000568232 CKLFQ9UBR5 152 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 BLOC1S6Q9UL45 172 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 ZNF257Q9Y2Q1 563 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms