RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ADTRPQ96IZ2 230 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 MGLLQ99685 303 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 WFDC10AQ9H1F0 79 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 ELF5Q9UKW6 265 aaPredicted RBP12.74□□□□□ -0.37
CLN3-211ENST00000564091 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 TRBV9A0A0B4J1U6 114 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 RBMY1BA6NDE4 496 aaKnown RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 RBMY1EA6NEQ0 496 aaKnown RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 PPP5D1E7EU14 171 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 AIREO43918 545 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 OR2J3O76001 311 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 HLA-AP01891 365 aaKnown RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 RBMY1DP0C7P1 496 aaKnown RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 SAA1P0DJI8 122 aaPredicted RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 GADD45AP24522 165 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 AQP4P55087 323 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 ARFRP1Q13795 201 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 DEFB114Q30KQ6 69 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 C19orf35Q6ZS72 473 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 TTC9CQ8N5M4 171 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 OSR1Q8TAX0 266 aaPredicted RBP12.73□□□□□ -0.37
CLN3-211ENST00000564091 DYNLRB2Q8TF09 96 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 DCUN1D5Q9BTE7 237 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 ACOT13Q9NPJ3 140 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 SLC2A8Q9NY64 477 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 SELENOKQ9Y6D0 94 aa12.73□□□□□ -0.37
CLN3-211ENST00000564091 FCGR3BO75015 233 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 TUSC2O75896 110 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 JTBO76095 146 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 ACTL6BO94805 426 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 TALDO1P37837 337 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 RANBP1P43487 201 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 GUCA2BQ16661 112 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 OR2B11Q5JQS5 317 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 SPIN2AQ99865 258 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 SPIN2BQ9BPZ2 258 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 NKX1-2Q9UD57 310 aaPredicted RBP12.72□□□□□ -0.37
CLN3-211ENST00000564091 DMRT1Q9Y5R6 373 aa12.72□□□□□ -0.37
CLN3-211ENST00000564091 HMX3A6NHT5 357 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 IFITM5A6NNB3 132 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 ANKRD65E5RJM6 399 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 OR2C1O95371 312 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 FOLR2P14207 255 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 RPL30P62888 115 aaKnown RBP12.71□□□□□ -0.37
CLN3-211ENST00000564091 CDK10Q15131 360 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 C15orf32Q32M92 178 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 MMD2Q8IY49 270 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 VKORC1L1Q8N0U8 176 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 NECAP1Q8NC96 275 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 SRD5A3Q9H8P0 318 aa12.71□□□□□ -0.37
CLN3-211ENST00000564091 C2orf70A6NJV1 201 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 OR11H12B2RN74 326 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 PDCD5O14737 125 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 IGHV3-23P01764 117 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 RAB6AP20340 208 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 CRHBPP24387 322 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 KIR2DS2P43631 304 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 SSX1Q16384 188 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 Q6ZS49 121 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 PRSS48Q7RTY5 328 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 LAX1Q8IWV1 398 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 IL17DQ8TAD2 202 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 NRG4Q8WWG1 115 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 KCTD12Q96CX2 325 aaKnown RBP12.7□□□□□ -0.38
CLN3-211ENST00000564091 WDR89Q96FK6 387 aaPredicted RBP12.7□□□□□ -0.38
CLN3-211ENST00000564091 ST6GALNAC5Q9BVH7 336 aa12.7□□□□□ -0.38
CLN3-211ENST00000564091 TRAV1-2A0A0B4J238 106 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 TEX22C9J3V5 150 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 E7EUB6 86 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 CREBL2O60519 120 aaPredicted RBP12.69□□□□□ -0.38
CLN3-211ENST00000564091 NFYAP23511 347 aaPredicted RBP12.69□□□□□ -0.38
CLN3-211ENST00000564091 KCTD9Q7L273 389 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 ZNF645Q8N7E2 425 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 CACNG8Q8WXS5 425 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 ATG5Q9H1Y0 275 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 OR51E2Q9H255 320 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 FBXL7Q9UJT9 491 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 S4R3C0 116 aa12.69□□□□□ -0.38
CLN3-211ENST00000564091 SMIM30A4D0T7 59 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 METTL21EPA6NDL7 271 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 GGCTO75223 188 aaKnown RBP12.68□□□□□ -0.38
CLN3-211ENST00000564091 IGLV2-14P01704 120 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 IL6RP08887 468 aaPredicted RBP12.68□□□□□ -0.38
CLN3-211ENST00000564091 CDNFQ49AH0 187 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 SLC25A42Q86VD7 318 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 FYTTD1Q96QD9 318 aaKnown RBP12.68□□□□□ -0.38
CLN3-211ENST00000564091 CENPOQ9BU64 300 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 ZC4H2Q9NQZ6 224 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 RBMX2Q9Y388 322 aaKnown RBP12.68□□□□□ -0.38
CLN3-211ENST00000564091 PRELID3BQ9Y3B1 194 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 OR2W1Q9Y3N9 320 aa12.68□□□□□ -0.38
CLN3-211ENST00000564091 IGKV1D-13A0A0B4J2D9 117 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 NDUFB8O95169 186 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 HLA-DQB1P01920 261 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 IGKV1-13P0DP09 117 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 RAB3BP20337 219 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 DTYMKP23919 212 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 MYL9P24844 172 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 CLEC19AQ6UXS0 136 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 NR2C2APQ86WQ0 139 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms