RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ADAM30Q9UKF2 790 aa10.45□□□□□ -0.74
CLK3-213ENST00000563842 FBXO7Q9Y3I1 522 aa10.45□□□□□ -0.74
CLK3-213ENST00000563842 SRRM4A7MD48 611 aaKnown RBP10.44□□□□□ -0.74
CLK3-213ENST00000563842 H3BUA1 57 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 HRASP01112 189 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 FXYD4P59646 89 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 RUNX1Q01196 453 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 EIF4EBP1Q13541 118 aaPredicted RBP10.44□□□□□ -0.74
CLK3-213ENST00000563842 SNX29P2Q8IUI4 249 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 MMD2Q8IY49 270 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 OR6F1Q8NGZ6 308 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 RAX2Q96IS3 184 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 FAM103A1Q9BTL3 118 aaKnown RBP10.44□□□□□ -0.74
CLK3-213ENST00000563842 KLK15Q9H2R5 256 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 TAS2R8Q9NYW2 309 aa10.44□□□□□ -0.74
CLK3-213ENST00000563842 ZMAT5Q9UDW3 170 aaKnown RBP10.44□□□□□ -0.74
CLK3-213ENST00000563842 ARPC1BO15143 372 aaKnown RBP10.43□□□□□ -0.74
CLK3-213ENST00000563842 RBFOX2O43251 390 aaKnown RBP eCLIP10.43□□□□□ -0.74
CLK3-213ENST00000563842 PMP2P02689 132 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 OR8U8P0C7N1 319 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 RCVRNP35243 200 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 RFX2P48378 723 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 RAB25P57735 213 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 TSPAN5P62079 268 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 RPL30P62888 115 aaKnown RBP10.43□□□□□ -0.74
CLK3-213ENST00000563842 PJVKQ0ZLH3 352 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 TNXAQ16473 311 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 PRSS8Q16651 343 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 OR2B11Q5JQS5 317 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 LPCAT3Q6P1A2 487 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 TMEM17Q86X19 198 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 POC5Q8NA72 575 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 CD300LFQ8TDQ1 290 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 PHB2Q99623 299 aa10.43□□□□□ -0.74
CLK3-213ENST00000563842 ZNF2Q9BSG1 426 aaPredicted RBP10.43□□□□□ -0.74
CLK3-213ENST00000563842 I3L521 148 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 RGS5O15539 181 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 TNFSF12O43508 249 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 SOX15O60248 233 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 OR2A4O95047 310 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 SAA1P0DJI8 122 aaPredicted RBP10.42□□□□□ -0.74
CLK3-213ENST00000563842 HLA-DMAP28067 261 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 S100GP29377 79 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 HRH1P35367 487 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 KIAA0141Q14154 515 aaPredicted RBP10.42□□□□□ -0.74
CLK3-213ENST00000563842 CMTM1Q8IZ96 169 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 SPAG16Q8N0X2 631 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 OR11H1Q8NG94 326 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 OR1N2Q8NGR9 330 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 MOB3AQ96BX8 217 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 OR2A7Q96R45 310 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 ZNF355PQ9NSJ1 428 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 RABL2AQ9UBK7 228 aaPredicted RBP10.42□□□□□ -0.74
CLK3-213ENST00000563842 EXTL2Q9UBQ6 330 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 SCOCQ9UIL1 159 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 RABL2BQ9UNT1 228 aa10.42□□□□□ -0.74
CLK3-213ENST00000563842 A0A0G2JLM5 398 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 MPPED1O15442 326 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 BRI3O95415 125 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 HPRT1P00492 218 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 TRGV3P03979 118 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 MAS1LP35410 378 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 TPPP2P59282 170 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 ZNF616Q08AN1 781 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 SPCS2Q15005 226 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 DEFB136Q30KP8 78 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 FOXB2Q5VYV0 432 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 IDO2Q6ZQW0 420 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 ZNF818PQ6ZRF7 136 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 LYSMD2Q8IV50 215 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 SRSF12Q8WXF0 261 aaKnown RBP10.41□□□□□ -0.74
CLK3-213ENST00000563842 RHOVQ96L33 236 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 DUX3Q96PT4 197 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 SPIN2AQ99865 258 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 SPIN2BQ9BPZ2 258 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 GNB4Q9HAV0 340 aa10.41□□□□□ -0.74
CLK3-213ENST00000563842 CCDC59Q9P031 241 aaKnown RBP10.41□□□□□ -0.74
CLK3-213ENST00000563842 NBEAL2Q6ZNJ1 2754 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 SORL1Q92673 2214 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 MSGN1A6NI15 193 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 KBTBD11O94819 623 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 LGALS1P09382 135 aaKnown RBP10.4□□□□□ -0.74
CLK3-213ENST00000563842 GNRHRP30968 328 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 TAS2R31P59538 309 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 SSBP2P81877 361 aaPredicted RBP10.4□□□□□ -0.74
CLK3-213ENST00000563842 MRPS10P82664 201 aaKnown RBP10.4□□□□□ -0.74
CLK3-213ENST00000563842 FHL3Q13643 280 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 AADACL3Q5VUY0 350 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 SLC25A42Q86VD7 318 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 OR5T1Q8NG75 326 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 OR4A5Q8NH83 315 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 TMEM167AQ8TBQ9 72 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 FCAMRQ8WWV6 532 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 MS4A10Q96PG2 267 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 OR5B12Q96R08 314 aa10.4□□□□□ -0.74
CLK3-213ENST00000563842 ZNF430Q9H8G1 570 aaPredicted RBP10.4□□□□□ -0.74
CLK3-213ENST00000563842 C13orf42A0A1B0GVH6 325 aa10.39□□□□□ -0.75
CLK3-213ENST00000563842 GPR31O00270 319 aa10.39□□□□□ -0.75
CLK3-213ENST00000563842 IFNA6P05013 189 aa10.39□□□□□ -0.75
CLK3-213ENST00000563842 NQO2P16083 231 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms