RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 VKORC1L1Q8N0U8 176 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 SPARTQ8N0X7 666 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 OR9G4Q8NGQ1 327 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 ADTRPQ96IZ2 230 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 GPHA2Q96T91 129 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 RNF167Q9H6Y7 350 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 C19orf73Q9NVV2 129 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 NOTOA8MTQ0 251 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 SSX5O60225 188 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 TUSC2O75896 110 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 CLEC2LP0C7M8 214 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 OR9G9P0C7N8 305 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 RRASP10301 218 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 RHOGP84095 191 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 ZNF45Q02386 682 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 EXOSC2Q13868 293 aaKnown RBP14.46□□□□□ -0.09
VPS35-202ENST00000561713 KLF5Q13887 457 aaPredicted RBP14.46□□□□□ -0.09
VPS35-202ENST00000561713 HACD4Q5VWC8 232 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 IL34Q6ZMJ4 242 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 ZNF645Q8N7E2 425 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 DCUN1D5Q9BTE7 237 aa14.46□□□□□ -0.09
VPS35-202ENST00000561713 PEF1Q9UBV8 284 aaKnown RBP14.46□□□□□ -0.09
VPS35-202ENST00000561713 RRP15Q9Y3B9 282 aaKnown RBP14.46□□□□□ -0.09
VPS35-202ENST00000561713 IZUMO1RA6ND01 250 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 IGLV2-14P01704 120 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 GNG2P59768 71 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 MXD1Q05195 221 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 ZNF343Q6P1L6 599 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 SFXN4Q6P4A7 337 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 TEX45Q8NA69 505 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 OR51E2Q9H255 320 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 AKIP1Q9NQ31 210 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 RBMX2Q9Y388 322 aaKnown RBP14.45□□□□□ -0.1
VPS35-202ENST00000561713 OR2W1Q9Y3N9 320 aa14.45□□□□□ -0.1
VPS35-202ENST00000561713 A8MZ25 164 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 ATP6V1G2O95670 118 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 FCER2P06734 321 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 PTHLHP12272 177 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 GALP22466 123 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 AADACP22760 399 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 CDK10Q15131 360 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 RPEL1Q2QD12 228 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 OSR1Q8TAX0 266 aaPredicted RBP14.44□□□□□ -0.1
VPS35-202ENST00000561713 TMEM68Q96MH6 324 aa14.44□□□□□ -0.1
VPS35-202ENST00000561713 HMX3A6NHT5 357 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 BMPR1BO00238 502 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 CSN3P07498 182 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 EDN2P20800 178 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 FGF9P31371 208 aaPredicted RBP14.43□□□□□ -0.1
VPS35-202ENST00000561713 SGPP2Q8IWX5 399 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 OR5H6Q8NGV6 325 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 TCTEX1D2Q8WW35 142 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 RHBDL2Q9NX52 303 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 TAS2R8Q9NYW2 309 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 SPATA2Q9UM82 520 aa14.43□□□□□ -0.1
VPS35-202ENST00000561713 OR2J3O76001 311 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 ACTL6BO94805 426 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 HLA-DQB1P01920 261 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 CD36P16671 472 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 SDC2P34741 201 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 HAGHQ16775 308 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 SLC25A38Q96DW6 304 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 USMG5Q96IX5 58 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 SPATA25Q9BR10 227 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 MRPS7Q9Y2R9 242 aaKnown RBP14.42□□□□□ -0.1
VPS35-202ENST00000561713 SELENOKQ9Y6D0 94 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 ALMS1Q8TCU4 4167 aa14.42□□□□□ -0.1
VPS35-202ENST00000561713 LOC100506127A0A0U1RQW1 187 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 PPP5D1E7EU14 171 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 TNFSF12O43508 249 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 BRI3O95415 125 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 MYOD1P15172 320 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 ARL6IP1Q15041 203 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 SSX9Q7RTT3 188 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 FCGR1BQ92637 280 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 ANXA10Q9UJ72 324 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 SSR3Q9UNL2 185 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 PRELID3BQ9Y3B1 194 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 S4R3C0 116 aa14.41□□□□□ -0.1
VPS35-202ENST00000561713 A0A1B0GW64 132 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 TEX22C9J3V5 150 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 MRPS14O60783 128 aaKnown RBP14.4□□□□□ -0.1
VPS35-202ENST00000561713 IGHV3-23P01764 117 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 HLA-AP01891 365 aaKnown RBP14.4□□□□□ -0.1
VPS35-202ENST00000561713 EIF4EBP1Q13541 118 aaPredicted RBP14.4□□□□□ -0.1
VPS35-202ENST00000561713 CNIH2Q6PI25 160 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 MMD2Q8IY49 270 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 GVQW1Q8N7I0 195 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 OR4S2Q8NH73 311 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 FYTTD1Q96QD9 318 aaKnown RBP14.4□□□□□ -0.1
VPS35-202ENST00000561713 THAP7Q9BT49 309 aaPredicted RBP14.4□□□□□ -0.1
VPS35-202ENST00000561713 DCSTAMPQ9H295 470 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 RETNQ9HD89 108 aa14.4□□□□□ -0.1
VPS35-202ENST00000561713 FAM223BA6NKX1 122 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 E7EUB6 86 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 CREBL2O60519 120 aaPredicted RBP14.39□□□□□ -0.11
VPS35-202ENST00000561713 KBTBD11O94819 623 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 OR2A4O95047 310 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 BRWD1-AS2P59051 145 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 ATP5G2Q06055 141 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms