RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PHB2Q99623 299 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 SRD5A3Q9H8P0 318 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 ERICH4A6NGS2 130 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 TEX22C9J3V5 150 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 PTGES3LE9PB15 166 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 TUSC2O75896 110 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 CRYZL1O95825 349 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 PRH1P02810 166 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 RPS25P62851 125 aaKnown RBP12.32□□□□□ -0.44
CLN3-208ENST00000561505 MMD2Q8IY49 270 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 OR10R2Q8NGX6 335 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 LINC00476Q8WZB0 136 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 WFDC10AQ9H1F0 79 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 ZNF257Q9Y2Q1 563 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 V9GY05 133 aa12.32□□□□□ -0.44
CLN3-208ENST00000561505 NPIPB5A8MRT5 1133 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 A8MWP6 167 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 CREBL2O60519 120 aaPredicted RBP12.31□□□□□ -0.44
CLN3-208ENST00000561505 GGCTO75223 188 aaKnown RBP12.31□□□□□ -0.44
CLN3-208ENST00000561505 CRYGCP07315 174 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 SAA1P0DJI8 122 aaPredicted RBP12.31□□□□□ -0.44
CLN3-208ENST00000561505 EDN2P20800 178 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 CBLN1P23435 193 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 SSX1Q16384 188 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 C15orf32Q32M92 178 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 IDO2Q6ZQW0 420 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 SLC25A42Q86VD7 318 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 WFDC3Q8IUB2 231 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 FANCD2OSQ96PS1 177 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 OVOL2Q9BRP0 275 aa12.31□□□□□ -0.44
CLN3-208ENST00000561505 IGKV1D-8A0A087WSZ0 117 aa12.3□□□□□ -0.44
CLN3-208ENST00000561505 IGLV2-14P01704 120 aa12.3□□□□□ -0.44
CLN3-208ENST00000561505 IL6RP08887 468 aaPredicted RBP12.3□□□□□ -0.44
CLN3-208ENST00000561505 HIST1H1DP16402 221 aaKnown RBP12.3□□□□□ -0.44
CLN3-208ENST00000561505 RAB6AP20340 208 aa12.3□□□□□ -0.44
CLN3-208ENST00000561505 FABP5Q01469 135 aa12.3□□□□□ -0.44
CLN3-208ENST00000561505 MLLT11Q13015 90 aaPredicted RBP12.3□□□□□ -0.44
CLN3-208ENST00000561505 EIF4EBP1Q13541 118 aaPredicted RBP12.3□□□□□ -0.44
CLN3-208ENST00000561505 RCN1Q15293 331 aa12.3□□□□□ -0.44
CLN3-208ENST00000561505 ACOT12Q8WYK0 555 aa12.3□□□□□ -0.44
CLN3-208ENST00000561505 WDR89Q96FK6 387 aaPredicted RBP12.3□□□□□ -0.44
CLN3-208ENST00000561505 TRAV1-2A0A0B4J238 106 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 A0A1B0GW64 132 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 TMEM213A2RRL7 107 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 PPP5D1E7EU14 171 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 E7EUB6 86 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 EBAG9O00559 213 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 OR2J3O76001 311 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 OR2C1O95371 312 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 HLA-DQB1P01920 261 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 ZNF735P0CB33 412 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 C8orf88P0DMB2 117 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 CALRP27797 417 aaKnown RBP12.29□□□□□ -0.44
CLN3-208ENST00000561505 BRWD1-AS2P59051 145 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 MRPS15P82914 257 aaKnown RBP12.29□□□□□ -0.44
CLN3-208ENST00000561505 C10orf55Q5SWW7 151 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 PUSL1Q8N0Z8 303 aaKnown RBP12.29□□□□□ -0.44
CLN3-208ENST00000561505 ZNF645Q8N7E2 425 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 DYNLRB2Q8TF09 96 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 CCDC140Q96MF4 163 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 OR51E2Q9H255 320 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 ACOT13Q9NPJ3 140 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 SLC2A9Q9NRM0 540 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 SCN3BQ9NY72 215 aa12.29□□□□□ -0.44
CLN3-208ENST00000561505 MPPED1O15442 326 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 SLC22A5O76082 557 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 GNB3P16520 340 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 ATF4P18848 351 aaPredicted RBP12.28□□□□□ -0.44
CLN3-208ENST00000561505 DTYMKP23919 212 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 MAS1LP35410 378 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 RPL30P62888 115 aaKnown RBP12.28□□□□□ -0.44
CLN3-208ENST00000561505 TMEM61Q8N0U2 210 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 TMEM167AQ8TBQ9 72 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 MAFIPQ8WZ33 124 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 GINS4Q9BRT9 223 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 KRTAP17-1Q9BYP8 105 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 MLXQ9UH92 298 aa12.28□□□□□ -0.44
CLN3-208ENST00000561505 TRAV25A0A0B4J276 109 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 IFITM5A6NNB3 132 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 ACTL6BO94805 426 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 HLA-AP01891 365 aaKnown RBP12.27□□□□□ -0.45
CLN3-208ENST00000561505 CTXN2P0C2S0 81 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 GADD45AP24522 165 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 PSMB6P28072 239 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 ARFRP1Q13795 201 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 GUCA2BQ16661 112 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 SLC16A13Q7RTY0 426 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 FYTTD1Q96QD9 318 aaKnown RBP12.27□□□□□ -0.45
CLN3-208ENST00000561505 MGLLQ99685 303 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 GGTLC1Q9BX51 225 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 FBXL7Q9UJT9 491 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 TP53TG1Q9Y2A0 90 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 RBMX2Q9Y388 322 aaKnown RBP12.27□□□□□ -0.45
CLN3-208ENST00000561505 OR2W1Q9Y3N9 320 aa12.27□□□□□ -0.45
CLN3-208ENST00000561505 RBM7Q9Y580 266 aaKnown RBP12.27□□□□□ -0.45
CLN3-208ENST00000561505 HMX3A6NHT5 357 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 NDUFB8O95169 186 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 CTRB1P17538 263 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 MAP2K4P45985 399 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 TNFRSF9Q07011 255 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms