RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 THBS3P49746 956 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 DVL1P1P54792 670 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 RPP30P78346 268 aaKnown RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CT45A1Q5HYN5 189 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 KLF17Q5JT82 389 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 VAX1Q5SQQ9 334 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM166AQ6J272 317 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CCDC144NLQ6NUI1 221 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 LINC00299Q6ZSB3 139 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 REC114Q7Z4M0 266 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 SLC25A42Q86VD7 318 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF645Q8N7E2 425 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 OR11H7Q8NGC8 314 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CT45A3Q8NHU0 189 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 DPF1Q92782 380 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM186Q96B77 213 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 HES4Q9HCC6 221 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 WASHC3Q9Y3C0 194 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 MGAM2Q2M2H8 2515 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 I3L521 148 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 IFNA7P01567 189 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CD8AP01732 235 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 MSMBP08118 114 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 SNRNP70P08621 437 aaKnown RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 LOXP28300 417 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 HTR2BP41595 481 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 RPL27AP46776 148 aaKnown RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 LGALS7P47929 136 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 SUB1P53999 127 aaKnown RBP eCLIP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 RPL30P62888 115 aaKnown RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 DHODHQ02127 395 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 KIAA0141Q14154 515 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 HERPUD1Q15011 391 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 C2orf68Q2NKX9 166 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM89BQ8N5H3 189 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 LFNGQ8NES3 379 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 OR1S2Q8NGQ3 325 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 OR2G3Q8NGZ4 309 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 NANPQ8TBE9 248 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM56Q96MV1 263 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 C1RLQ9NZP8 487 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 OR51B2Q9Y5P1 312 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 MDFIC2A0A1B0GVS7 189 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 A0A1W2PN81 502 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CYB5BO43169 146 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 SYNGR2O43760 224 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 OR7C2O60412 319 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 MPC2O95563 127 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 MPZP25189 248 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CHRNA7P36544 502 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 UBE2G2P60604 165 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 QRFPP83859 136 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 NHLH2Q02577 135 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FXYD3Q14802 87 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 DEFB113Q30KQ7 82 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 DMRTA1Q5VZB9 504 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 CENPVQ7Z7K6 275 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 SFT2D1Q8WV19 159 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 GPR146Q96CH1 333 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 LURAP1Q96LR2 239 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM68Q96MH6 324 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 P2RX4Q99571 388 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 TSNAXQ99598 290 aaKnown RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 LPAR3Q9UBY5 353 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 TMED3Q9Y3Q3 217 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 IGKV1-6A0A0C4DH72 117 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 LDLRAD4O15165 306 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM127O75204 238 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TSPAN15O95858 294 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 LYZP61626 148 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 RPL8P62917 257 aaKnown RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 PJVKQ0ZLH3 352 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 FAM122CQ6P4D5 195 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 IL34Q6ZMJ4 242 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ADTRPQ96IZ2 230 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 SLC25A32Q9H2D1 315 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ZFP57Q9NU63 452 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV3-66A0A0C4DH42 116 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 WIPF3A6NGB9 483 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 H3BTX0 84 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TRIM77I1YAP6 450 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 J3KRW8 73 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 M0R036 132 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF737O75373 536 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ALX3O95076 343 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 IGKV1-16P04430 117 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 HSPB1P04792 205 aaKnown RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 DANCRP0C864 163 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 FGF7P21781 194 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 RUNX1Q01196 453 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 HIST2H2BDQ6DRA6 164 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 LCNL1Q6ZST4 164 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF486Q96H40 463 aaPredicted RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 SMR3AQ99954 134 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 OR5AC2Q9NZP5 309 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 ITPR1Q14643 2758 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TRBV6-7A0A0A0MS04 114 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 MSGN1A6NI15 193 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 SNRPGP15A8MWD9 76 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms