RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 RPP25LQ8N5L8 163 aaKnown RBP9.52□□□□□ -0.89
CUX1-218ENST00000560541 DRAM1Q8N682 238 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 OR2D3Q8NGH3 330 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 BTF3L4Q96K17 158 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 OR51I2Q9H344 312 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 PATZ1Q9HBE1 687 aaKnown RBP9.52□□□□□ -0.89
CUX1-218ENST00000560541 SLC39A9Q9NUM3 307 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 HSPB7Q9UBY9 170 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 TOMM40O96008 361 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 BMP5P22003 454 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 G6PCP35575 357 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 ALKBH6Q3KRA9 238 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 TMEM41BQ5BJD5 291 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 OR4A47Q6IF82 309 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 MDP1Q86V88 176 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 CXorf67Q86X51 503 aaPredicted RBP9.52□□□□□ -0.89
CUX1-218ENST00000560541 TMEM251Q8N6I4 163 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 B4GALT7Q9UBV7 327 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 CLN8Q9UBY8 286 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 CFAP47Q6ZTR5 3102 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 OR5B21A6NL26 309 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 B4DEV8 164 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 K7ERU9 68 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 GRPP07492 148 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 COA6Q5JTJ3 125 aaKnown RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 OR10G4Q8NGN3 311 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 MBD3L1Q8WWY6 194 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 TAF15Q92804 592 aaKnown RBP eCLIP9.51□□□□□ -0.89
CUX1-218ENST00000560541 LSM10Q969L4 123 aaKnown RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 LIN7CQ9NUP9 197 aaKnown RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 MPC1Q9Y5U8 109 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 TRBV24-1A0A075B6N3 115 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 SLC25A6P12236 298 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 LINC00205P59089 165 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 PNRC1Q12796 327 aaPredicted RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 ACSM6Q6P461 480 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 Q6ZWC4 215 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 C16orf82Q7Z2V1 217 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 SCCPDHQ8NBX0 429 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 HSPB9Q9BQS6 159 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 TRBV6-6A0A0A6YYG2 114 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 J3QT63 122 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 CER1O95813 267 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 RND2P52198 227 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 PMP22Q01453 160 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 MRGPRGQ86SM5 289 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 LINC00596Q86U02 117 aa9.51□□□□□ -0.89
CUX1-218ENST00000560541 PSMG3Q9BT73 122 aaPredicted RBP9.51□□□□□ -0.89
CUX1-218ENST00000560541 OPN1MWP04001 364 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 OPN1MW2P0DN77 364 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 OPN1MW3P0DN78 364 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 PRSS57Q6UWY2 283 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 ZNF497Q6ZNH5 498 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 OR1L1Q8NH94 360 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 ZDHHC16Q969W1 377 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 GRIFINA4D1Z8 144 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 GALR2O43603 387 aaPredicted RBP9.5□□□□□ -0.89
CUX1-218ENST00000560541 RBMXL2O75526 392 aaKnown RBP9.5□□□□□ -0.89
CUX1-218ENST00000560541 STAG3L3P0CL85 134 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 RPL30P62888 115 aaKnown RBP9.5□□□□□ -0.89
CUX1-218ENST00000560541 SERF2P84101 59 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 WDYHV1Q96HA8 205 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 ACY3Q96HD9 319 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 OR2D2Q9H210 308 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 PLSCR4Q9NRQ2 329 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 TMEM106BQ9NUM4 274 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 BOD1L1Q8NFC6 3051 aa9.5□□□□□ -0.89
CUX1-218ENST00000560541 TNFSF4P23510 183 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 KRTDAPP60985 99 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 MEF2BQ02080 365 aaPredicted RBP9.49□□□□□ -0.89
CUX1-218ENST00000560541 TMEM241Q24JQ0 296 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 SAMD13Q5VXD3 122 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 DEFB127Q9H1M4 99 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 IFNA1P01562 189 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 RANP62826 216 aaKnown RBP9.49□□□□□ -0.89
CUX1-218ENST00000560541 TFF3Q07654 80 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 SPATA45Q537H7 98 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 TPRX1Q8N7U7 411 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 OR52L2PQ8NGH6 319 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 OR4F5Q8NH21 305 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 TMEM170AQ8WVE7 144 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 OR4F4Q96R69 305 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 FAM103A1Q9BTL3 118 aaKnown RBP9.49□□□□□ -0.89
CUX1-218ENST00000560541 WNT9BO14905 357 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 PSPNO60542 156 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 MMP23AO75900 390 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 GCH1P30793 250 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 CEACAM3P40198 252 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 CNN1P51911 297 aaKnown RBP9.49□□□□□ -0.89
CUX1-218ENST00000560541 ZNF826PQ6ZT77 177 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 RTL8AQ9BWD3 113 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 PKIBQ9C010 78 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 BET1LQ9NYM9 111 aa9.49□□□□□ -0.89
CUX1-218ENST00000560541 TRAV30A0A087WSZ9 112 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 C9orf172C9J069 976 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 ZG16O60844 167 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 S1PR2O95136 353 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 AESQ08117 197 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms