RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 RAXQ9Y2V3 346 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 F2RL2O00254 374 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 RAB29O14966 203 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 CGB3P0DN86 165 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 CGB7P0DN87 165 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 TRAT1Q6PIZ9 186 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 LFNGQ8NES3 379 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 CLDND2Q8NHS1 167 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 KIAA1456Q9P272 454 aa8.76□□□□□ -1.01
CUX1-217ENST00000558836 ABCA1O95477 2261 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 MALRD1Q5VYJ5 2156 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 COLCA2A8K830 154 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 C17orf100A8MU93 164 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 ZNF727A8MUV8 499 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 FAM90A26D6RGX4 464 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SCAF4O95104 1147 aaKnown RBP8.75□□□□□ -1.01
CUX1-217ENST00000558836 CCL3L1P16619 93 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 TMEM11P17152 192 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 GRNP28799 593 aaKnown RBP8.75□□□□□ -1.01
CUX1-217ENST00000558836 ZNF787Q6DD87 383 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 ACSM6Q6P461 480 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 ABHD12Q8N2K0 398 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 OR10P1Q8NGE3 313 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 OR4A16Q8NH70 328 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 RND1Q92730 232 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 GFOD1Q9NXC2 390 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 ITPR1Q14643 2758 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 A0A1W2PPH5 198 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 ZNF98A6NK75 572 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 PMS2P5A8MQ11 134 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 FCN3O75636 299 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SRP19P09132 144 aaKnown RBP8.75□□□□□ -1.01
CUX1-217ENST00000558836 FGF7P21781 194 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 PAX5Q02548 391 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 PRB3Q04118 309 aaPredicted RBP8.75□□□□□ -1.01
CUX1-217ENST00000558836 CR1LQ2VPA4 569 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 ZNF788Q6ZQV5 615 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 RPP25LQ8N5L8 163 aaKnown RBP8.75□□□□□ -1.01
CUX1-217ENST00000558836 LINC01560Q8TB33 94 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 FAM222BQ8WU58 562 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SDSLQ96GA7 329 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 HINT2Q9BX68 163 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SLC25A22Q9H936 323 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SAP30LQ9HAJ7 183 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SSUH2Q9Y2M2 353 aa8.75□□□□□ -1.01
CUX1-217ENST00000558836 SMCO3A2RU48 225 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 HPRT1P00492 218 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 IFNA10P01566 189 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 RPL35P42766 123 aaKnown RBP8.74□□□□□ -1.01
CUX1-217ENST00000558836 C3orf36Q3SXR2 165 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 LYPD2Q6UXB3 125 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 FAM24BQ8N5W8 94 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 NUP37Q8NFH4 326 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 SMCO4Q9NRQ5 59 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 TMEM140Q9NV12 185 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 NDRG3Q9UGV2 375 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 RALYQ9UKM9 306 aaKnown RBP8.74□□□□□ -1.01
CUX1-217ENST00000558836 hCG_1809904A0A1W2PP81 198 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 A0A1W2PR64 198 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 A0A1W2PRV1 198 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 RRHO14718 337 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 PLAUP00749 431 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 REG1BP48304 166 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 RAB11AP62491 216 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 MRPS11P82912 194 aaKnown RBP8.74□□□□□ -1.01
CUX1-217ENST00000558836 GCSAMLQ5JQS6 135 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 SP5Q6BEB4 398 aaPredicted RBP8.74□□□□□ -1.01
CUX1-217ENST00000558836 ZNF383Q8NA42 475 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 H1FXQ92522 213 aaKnown RBP8.74□□□□□ -1.01
CUX1-217ENST00000558836 HEYLQ9NQ87 328 aaPredicted RBP8.74□□□□□ -1.01
CUX1-217ENST00000558836 ELOVL5Q9NYP7 299 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 VPS13CQ709C8 3753 aa8.74□□□□□ -1.01
CUX1-217ENST00000558836 FAM90A27PA6NNH2 459 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 C15orf62A8K5M9 175 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 LYNX1G3V0Z9 82 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 H3BQ15 152 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 PPIHO43447 177 aaKnown RBP8.73□□□□□ -1.01
CUX1-217ENST00000558836 IGKV1-16P04430 117 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 LYNX1P0DP58 116 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 DLX1P56177 255 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 GATAD1Q8WUU5 269 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 RHOVQ96L33 236 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 SLC25A10Q9UBX3 287 aaPredicted RBP8.73□□□□□ -1.01
CUX1-217ENST00000558836 ZNF835Q9Y2P0 537 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 PRELID3BQ9Y3B1 194 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 ZNF251Q9BRH9 671 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 LAMP3Q9UQV4 416 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 URGCP-MRPS24S4R325 110 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 ARHGAP32A7KAX9 2087 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 MAP1LC3B2A6NCE7 125 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 E7EQL1 145 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 GFRA3O60609 400 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 TNFRSF1AP19438 455 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 ERVK-16P61578 105 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 RPL31P62899 125 aaKnown RBP8.73□□□□□ -1.01
CUX1-217ENST00000558836 ZNF429Q86V71 674 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 LHX4Q969G2 390 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 RAB39BQ96DA2 213 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 C12orf57Q99622 126 aa8.73□□□□□ -1.01
CUX1-217ENST00000558836 MAP1LC3BQ9GZQ8 125 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms