RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZNF222Q9UK12 451 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 JPT1Q9UK76 154 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 ELF5Q9UKW6 265 aaPredicted RBP4.19□□□□□ -1.74
LDLR-209ENST00000558528 GAB2Q9UQC2 676 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 NSG2Q9Y328 171 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 OR2W1Q9Y3N9 320 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 LINC00312Q9Y6C7 94 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 RYR3Q15413 4870 aa4.19□□□□□ -1.74
LDLR-209ENST00000558528 KMT2CQ8NEZ4 4911 aaKnown RBP4.19□□□□□ -1.74
LDLR-209ENST00000558528 PHF3Q92576 2039 aaKnown RBP4.19□□□□□ -1.74
LDLR-209ENST00000558528 ANK3Q12955 4377 aaKnown RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 DOCK7Q96N67 2140 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 TEX13DA0A0J9YY54 714 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 KBTBD11-OT1A0A1B0GTJ5 212 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 C19orf84I3L1E1 186 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OVOL3O00110 214 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 GPR31O00270 319 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 SDCBPO00560 298 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 CCSO14618 274 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 TNFRSF13BO14836 293 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 BET1O15155 118 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 PPIHO43447 177 aaKnown RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 SSNA1O43805 119 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CCNKO75909 580 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 PPYP01298 95 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 IFNA21P01568 189 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CD8AP01732 235 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 GYPAP02724 150 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 SOD3P08294 240 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 SCTP09683 121 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OR4E1P0C645 316 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 COL8A2P25067 703 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CD80P33681 288 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 RBMXP38159 391 aaKnown RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 CEACAM6P40199 344 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 PDLIM4P50479 330 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 RND3P61587 244 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 RRAS2P62070 204 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 RPL31P62899 125 aaKnown RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 AESQ08117 197 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 FGL1Q08830 312 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 FOXE3Q13461 319 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 ATXN7L3Q14CW9 347 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 PDLIM3Q53GG5 364 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 PAPPA-AS1Q5QFB9 102 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 ZNF626Q68DY1 528 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 COX8CQ7Z4L0 72 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 TMED4Q7Z7H5 227 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 LYG2Q86SG7 212 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 AKAP14Q86UN6 197 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 LRRC75A-AS1Q8N1F1 130 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OR11H4Q8NGC9 324 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OR4D10Q8NGI6 311 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OR10V1Q8NGI7 309 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OR13C8Q8NGS7 320 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 PLPPR1Q8TBJ4 325 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 ZNF431Q8TF32 576 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 UPRTQ96BW1 309 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 C8orf49Q96NF6 230 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 GAFA1Q96PS6 74 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CCL13Q99616 98 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CCL19Q99731 98 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 TMEM246Q9BRR3 403 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 HDHD3Q9BSH5 251 aaPredicted RBP4.18□□□□□ -1.74
LDLR-209ENST00000558528 NDUFAF3Q9BU61 184 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 SUCNR1Q9BXA5 334 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 GPR61Q9BZJ8 451 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 LINC00574Q9H8X3 128 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 OR2S2Q9NQN1 319 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 ZFP57Q9NU63 452 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 PIPOXQ9P0Z9 390 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CLN8Q9UBY8 286 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 CACFD1Q9UGQ2 172 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 KIF25Q9UIL4 384 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 ALG5Q9Y673 324 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 MED12LQ86YW9 2145 aa4.18□□□□□ -1.74
LDLR-209ENST00000558528 LOC105371242A0A075B767 164 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 IGHV3OR15-7A0A075B7D8 119 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 DUXBA0A1W2PPF3 345 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 HELTA6NFD8 242 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 OR5H14A6NHG9 310 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 SFT2D2O95562 160 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 DUS4LO95620 317 aaKnown RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 HLA-AP01891 365 aaKnown RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 HBZP02008 142 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 RBP4P02753 201 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 WNT2P09544 360 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 PAX1P15863 534 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 SPNP16150 400 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 AKR1C4P17516 323 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 HLA-GP17693 338 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 RCC1P18754 421 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 C4BPBP20851 252 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 IL3RAP26951 378 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 CD34P28906 385 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 NKX2-1P43699 371 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 PIGPP57054 158 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 CATR1Q13166 79 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 EDDM3AQ14507 147 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms