RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CACNA1BQ00975 2339 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 LRRC30A6NM36 301 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 IGLV3-19P01714 112 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 HNRNPA3P51991 378 aaKnown RBP9.52□□□□□ -0.89
LDLR-208ENST00000558518 MAJINQ3KP22 176 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 LYSMD4Q5XG99 296 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 AGBL5Q8NDL9 886 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 SF3B5Q9BWJ5 86 aaKnown RBP9.52□□□□□ -0.89
LDLR-208ENST00000558518 RNASE7Q9H1E1 156 aaKnown RBP9.52□□□□□ -0.89
LDLR-208ENST00000558518 CACNA1HO95180 2353 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 OR7C2O60412 319 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 SCCPDHQ8NBX0 429 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 FAM216AQ8WUB2 273 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 PLEKHA3Q9HB20 300 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 ZNF586Q9NXT0 402 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 WNK2Q9Y3S1 2297 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 TRBV20OR9-2A0A075B6H5 130 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 GGCTO75223 188 aaKnown RBP9.51□□□□□ -0.89
LDLR-208ENST00000558518 FOXH1O75593 365 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 IGHV3-48P01763 117 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 RIMS4Q9H426 269 aaPredicted RBP9.51□□□□□ -0.89
LDLR-208ENST00000558518 ZNF391Q9UJN7 358 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 MED13LQ71F56 2210 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 A8MXE2 369 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 PSPNO60542 156 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 LYZL6O75951 148 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 CER1O95813 267 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 HBZP02008 142 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 SOX8P57073 446 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 TCTAP57738 103 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 ABLIM2Q6H8Q1 611 aa9.51□□□□□ -0.89
LDLR-208ENST00000558518 LSM10Q969L4 123 aaKnown RBP9.51□□□□□ -0.89
LDLR-208ENST00000558518 TBL2Q9Y4P3 447 aaKnown RBP9.51□□□□□ -0.89
LDLR-208ENST00000558518 IGLV2-14P01704 120 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 RAB4AP20338 218 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 TIMP3P35625 211 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 ELOVL5Q9NYP7 299 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 TP73-AS1Q9UF72 201 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 PXMP4Q9Y6I8 212 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 TANC2Q9HCD6 1990 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 A0A1B0GWJ7 208 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 RNF212BA8MTL3 300 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 C12orf77C9JDV5 145 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 M0R1X1 148 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 RRHO14718 337 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 MYOD1P15172 320 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 Q56UQ5 140 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 MRPL14Q6P1L8 145 aaKnown RBP9.5□□□□□ -0.89
LDLR-208ENST00000558518 FOXL2NBQ6ZUU3 175 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 TCFL5Q9UL49 500 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 RNF114Q9Y508 228 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 EXPH5Q8NEV8 1989 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 KLF7O75840 302 aaPredicted RBP9.5□□□□□ -0.89
LDLR-208ENST00000558518 SRFP11831 508 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 BRS3P32247 399 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 CAMPP49913 170 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 RPP30P78346 268 aaKnown RBP9.5□□□□□ -0.89
LDLR-208ENST00000558518 UNQ5815/PRO19632Q6UWF5 114 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 MDP1Q86V88 176 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 R3HDM4Q96D70 268 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 IMMP1LQ96LU5 166 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 MIEN1Q9BRT3 115 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 LRFN3Q9BTN0 628 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 PRDM14Q9GZV8 571 aa9.5□□□□□ -0.89
LDLR-208ENST00000558518 DYSFO75923 2080 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 C20orf202A1L168 122 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 CBY3A6NI87 242 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 CGAP01215 116 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 OR5G3P0C626 314 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 BTF3P20290 206 aaKnown RBP9.49□□□□□ -0.89
LDLR-208ENST00000558518 CRYBB3P26998 211 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 SRIP30626 198 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 RAB30Q15771 203 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 TMEM14EPQ6UXP3 125 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 PQLC2Q6ZP29 291 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 LHFPL4Q7Z7J7 247 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 TECTBQ96PL2 329 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 ZNF576Q9H609 170 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 FBXL7Q9UJT9 491 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 HCFC1P51610 2035 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 LINC00473A8K010 186 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 AGFG2O95081 481 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 HAND1O96004 215 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 CXCL12P48061 93 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 B3GALT5-AS1P59052 145 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 PSG5Q15238 335 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 HSD17B10Q99714 261 aaKnown RBP9.49□□□□□ -0.89
LDLR-208ENST00000558518 PYGO2Q9BRQ0 406 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 RTL8AQ9BWD3 113 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 SEPSECSQ9HD40 501 aaKnown RBP9.49□□□□□ -0.89
LDLR-208ENST00000558518 TRAV3A0A0B4J244 114 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 DCAF10Q5QP82 559 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 MMD2Q8IY49 270 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 CNEP1R1Q8N9A8 125 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 ZNF439Q8NDP4 499 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 KCNE4Q8WWG9 221 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 MS4A5Q9H3V2 200 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 METRNQ9UJH8 293 aa9.49□□□□□ -0.89
LDLR-208ENST00000558518 NEURL1O76050 574 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 OR9G9P0C7N8 305 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms