RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CCL8P80075 99 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 MEF2CQ06413 473 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 HAGHQ16775 308 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 OR2C3Q8N628 320 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 OR10A7Q8NGE5 316 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 OR52M1Q8NGK5 317 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 FAM213BQ8TBF2 198 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 CORO2AQ92828 525 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 PACRGQ96M98 296 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 RBM14Q96PK6 669 aaKnown RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 GAFA1Q96PS6 74 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 C20orf24Q9BUV8 137 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 CFAP47Q6ZTR5 3102 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 ZFYVE26Q68DK2 2539 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 PPIAL4EA0A075B759 164 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 hADV38S2A0JD32 116 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 NKX2-6A6NCS4 301 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 FAM90A26D6RGX4 464 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 PPIAL4DF5H284 164 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 TMEM178BH3BS89 294 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 ADAM20O43506 726 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 PPIAL4FP0DN26 164 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 SSTR5P35346 364 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 NUTF2P61970 127 aaKnown RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 VAMP2P63027 116 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 GAMTQ14353 236 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 SPRNQ5BIV9 151 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 SPSB3Q6PJ21 355 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 C5orf24Q7Z6I8 188 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 FOXRED2Q8IWF2 684 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 ZNRF1Q8ND25 227 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 OR52L2PQ8NGH6 319 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 OR2G3Q8NGZ4 309 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 R3HDM4Q96D70 268 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 SRD5A3Q9H8P0 318 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 LINC00574Q9H8X3 128 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 CALYQ9NYX4 217 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 RALYQ9UKM9 306 aaKnown RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 GAB2Q9UQC2 676 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 CBY1Q9Y3M2 126 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 PPIAL4AQ9Y536 164 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 ZFHX4Q86UP3 3567 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 KBTBD11-OT1A0A1B0GTJ5 212 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 TCAPO15273 167 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 METTL15P1P0C7V9 234 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 PPP1CCP36873 323 aaKnown RBP10.49□□□□□ -0.73
SHMT2-229ENST00000557348 KIR2DS2P43631 304 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 PDLIM4P50479 330 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 EWSR1Q01844 656 aaKnown RBP eCLIP10.49□□□□□ -0.73
SHMT2-229ENST00000557348 ID3Q02535 119 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 PYGO2Q9BRQ0 406 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 GAL3ST2Q9H3Q3 398 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 C11orf1Q9H5F2 150 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 WFDC1Q9HC57 220 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 TMEM106BQ9NUM4 274 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 CISD1Q9NZ45 108 aaKnown RBP10.49□□□□□ -0.73
SHMT2-229ENST00000557348 CLN8Q9UBY8 286 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 LINC00312Q9Y6C7 94 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 POLEQ07864 2286 aa10.49□□□□□ -0.73
SHMT2-229ENST00000557348 CYB5BO43169 146 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 LY86O95711 162 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 SOD3P08294 240 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 TRGC1P0CF51 173 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 GPR12P47775 334 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 PPOXP50336 477 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 LY6DQ14210 128 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 ZNF672Q499Z4 452 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-229ENST00000557348 MORN2Q502X0 79 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 TPRX1Q8N7U7 411 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 RAB40CQ96S21 281 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 AGMATQ9BSE5 352 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 TMEM204Q9BSN7 226 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 GPR61Q9BZJ8 451 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 LYRM2Q9NU23 88 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-229ENST00000557348 RCL1Q9Y2P8 373 aaKnown RBP10.48□□□□□ -0.73
SHMT2-229ENST00000557348 MMP24Q9Y5R2 645 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 NBEAQ8NFP9 2946 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 SPTA1P02549 2419 aa10.48□□□□□ -0.73
SHMT2-229ENST00000557348 CHD3Q12873 2000 aaKnown RBP10.48□□□□□ -0.73
SHMT2-229ENST00000557348 CLDN1O95832 211 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 IFNA1P01562 189 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 GYPAP02724 150 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 CGB3P0DN86 165 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 CGB7P0DN87 165 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 ZNF16P17020 682 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 GAGE1Q13065 139 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 EIF4EBP1Q13541 118 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 ICAM4Q14773 271 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 C4orf17Q53FE4 359 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 LRRC10Q5BKY1 277 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 CLEC9AQ6UXN8 241 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 TMEM182Q6ZP80 229 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 MUC15Q8N387 334 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 CLDND2Q8NHS1 167 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 UBALD1Q8TB05 177 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 LINC01560Q8TB33 94 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 HIST1H2BLQ99880 126 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 SMIM3Q9BZL3 60 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 KAAG1Q9UBP8 84 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms