RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MT-CO2P00403 227 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 TCL1AP56279 114 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 CD81P60033 236 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 RPL30P62888 115 aaKnown RBP12.49□□□□□ -0.41
CUX1-215ENST00000556210 MIC13Q5XKP0 118 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 C14orf144Q96I85 54 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 ZDHHC11Q9H8X9 412 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 IGKV3D-15A0A087WSY6 115 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 COX5BP10606 129 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 FOXL2NBQ6ZUU3 175 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 SH2D2AQ9NP31 389 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 DOPEY2Q9Y3R5 2298 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A10PA6NDY2 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A18PA6NE21 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A16PA6NEW6 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A20PA6NIJ5 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A8PA6NJQ4 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A7PA6NKC0 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A22PA8MWA6 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A12PA8MX19 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A5PA8MXJ8 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A23PA8MXZ1 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A15PP0C7V4 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A13PP0C7W8 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A14PP0C7W9 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A24PP0C7X0 464 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 ID3Q02535 119 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 ZNF324BQ6AW86 544 aaPredicted RBP12.48□□□□□ -0.41
CUX1-215ENST00000556210 TMEM56Q96MV1 263 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 QTRT1Q9BXR0 403 aaKnown RBP12.48□□□□□ -0.41
CUX1-215ENST00000556210 TMEM56-RWDD3S4R434 201 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 SPTBN4Q9H254 2564 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 ANKHD1Q8IWZ3 2542 aaKnown RBP12.48□□□□□ -0.41
CUX1-215ENST00000556210 ZNF25P17030 456 aaPredicted RBP12.48□□□□□ -0.41
CUX1-215ENST00000556210 MEF2BQ02080 365 aaPredicted RBP12.48□□□□□ -0.41
CUX1-215ENST00000556210 ZNF90Q03938 601 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 GABRA6Q16445 453 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 RPRMLQ8N4K4 120 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 PLSCR2Q9NRY7 297 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 UHRF2Q96PU4 802 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 HIST1H2BLQ99880 126 aa12.48□□□□□ -0.41
CUX1-215ENST00000556210 ANKRD11Q6UB99 2663 aaPredicted RBP12.48□□□□□ -0.41
CUX1-215ENST00000556210 LRRC30A6NM36 301 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 NDUFB4O95168 129 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 ARL16Q0P5N6 197 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 SPSB3Q6PJ21 355 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 SAXO1Q8IYX7 474 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 RBMXL3Q8N7X1 1067 aaKnown RBP12.47□□□□□ -0.41
CUX1-215ENST00000556210 LRTM2Q8N967 370 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 OR51G1Q8NGK1 321 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 OR4P4Q8NGL7 312 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 FKBP11Q9NYL4 201 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 A8MXE2 369 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 IGKV1-5P01602 117 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 MBP02144 154 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 ZNF645Q8N7E2 425 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 OR4X1Q8NH49 305 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 FAM103A1Q9BTL3 118 aaKnown RBP12.47□□□□□ -0.41
CUX1-215ENST00000556210 CISD1Q9NZ45 108 aaKnown RBP12.47□□□□□ -0.41
CUX1-215ENST00000556210 PGPEP1LA6NFU8 196 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 PRR33A8MZF0 331 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 M0R143 59 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 PLAUP00749 431 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 OR10J4P0C629 311 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 DPPA3Q6W0C5 159 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 FAM216AQ8WUB2 273 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 NEIL1Q96FI4 390 aaPredicted RBP12.47□□□□□ -0.41
CUX1-215ENST00000556210 CBLN4Q9NTU7 201 aa12.47□□□□□ -0.41
CUX1-215ENST00000556210 FAM90A27PA6NNH2 459 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 ZNF891A8MT65 544 aaPredicted RBP12.46□□□□□ -0.41
CUX1-215ENST00000556210 IGLV3-1P01715 115 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 GZMHP20718 246 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 HES1Q14469 280 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 TMEM183AQ8IXX5 376 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 RNF138Q8WVD3 245 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 SPSB4Q96A44 273 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 MGAQ8IWI9 3026 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 COX7A1P24310 79 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 CD1BP29016 333 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 CRIP3Q6Q6R5 217 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 DBX2Q6ZNG2 339 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 FAM216BQ8N7L0 139 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 ACACBO00763 2458 aa12.46□□□□□ -0.41
CUX1-215ENST00000556210 DUXBA0A1W2PPF3 345 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 F6UZH7 168 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 TAS2R60P59551 318 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 ACP7Q6ZNF0 438 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 FAM122AQ96E09 287 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 PARD6AQ9NPB6 346 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 DSPP15924 2871 aaKnown RBP12.46□□□□□ -0.42
CUX1-215ENST00000556210 FAM157AC9JC47 383 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 GALR2O43603 387 aaPredicted RBP12.46□□□□□ -0.42
CUX1-215ENST00000556210 CASP6P55212 293 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 SERF2P84101 59 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 NMSQ5H8A3 153 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 PCSK4Q6UW60 755 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 SSC4DQ8WTU2 575 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 SGK494Q96LW2 274 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 SDF2L1Q9HCN8 221 aa12.46□□□□□ -0.42
CUX1-215ENST00000556210 GATA2P23769 480 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms