RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ITGB3BPQ13352 177 aaPredicted RBP1.69□□□□□ -2.14
VPS29-205ENST00000548539 PTRHD1Q6GMV3 140 aaKnown RBP1.69□□□□□ -2.14
VPS29-205ENST00000548539 SLC35E3Q7Z769 313 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 ZNF283Q8N7M2 679 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 Q9BRP9 147 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 MRPS26Q9BYN8 205 aaKnown RBP1.69□□□□□ -2.14
VPS29-205ENST00000548539 CXCL16Q9H2A7 254 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 OR51I2Q9H344 312 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 PARVGQ9HBI0 331 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 SAMHD1Q9Y3Z3 626 aaKnown RBP1.69□□□□□ -2.14
VPS29-205ENST00000548539 FAM215AQ9Y5M1 114 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 ADCY9O60503 1353 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 OTOFQ9HC10 1997 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 TRGV5A0A0B4J1U4 118 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 C2orf74A8MZ97 194 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 J3QQQ9 107 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 BHLHE40O14503 412 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 NPYP01303 97 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 IFNA5P01569 189 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 TNNC2P02585 160 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 IGKV1-16P04430 117 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 MYL12AP19105 171 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 RPL26P61254 145 aaKnown RBP1.68□□□□□ -2.14
VPS29-205ENST00000548539 RPL30P62888 115 aaKnown RBP1.68□□□□□ -2.14
VPS29-205ENST00000548539 LRRC75BQ2VPJ9 315 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 C8orf74Q6P047 294 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 C5orf46Q6UWT4 87 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 ZNF550Q7Z398 422 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 GPR32P1Q8NGA4 272 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 OR51T1Q8NGJ9 327 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 SGMS2Q8NHU3 365 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 ZNF675Q8TD23 568 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 ASB17Q8WXJ9 295 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 GPR84Q9NQS5 396 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 RPL26L1Q9UNX3 145 aaKnown RBP1.68□□□□□ -2.14
VPS29-205ENST00000548539 GRIN2BQ13224 1484 aa1.68□□□□□ -2.14
VPS29-205ENST00000548539 ADAMTS7Q9UKP4 1686 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 C9orf84Q5VXU9 1444 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 TGIF2-C20orf24A0A0A6YYL0 155 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 A0A1B0GVG6 124 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 ARRDC5A6NEK1 342 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 OR4C45A6NMZ5 311 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 PLA2G10O15496 165 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 CD24P25063 80 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 FXYD7P58549 80 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 TAS2R20P59543 309 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 KRTAP12-4P60329 112 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 MAGOHP61326 146 aaKnown RBP1.67□□□□□ -2.14
VPS29-205ENST00000548539 ERHP84090 104 aaKnown RBP1.67□□□□□ -2.14
VPS29-205ENST00000548539 ZNF90Q03938 601 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 EMX1Q04741 257 aaPredicted RBP1.67□□□□□ -2.14
VPS29-205ENST00000548539 FABP9Q0Z7S8 132 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 BATFQ16520 125 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 LPCAT4Q643R3 524 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 SFXN4Q6P4A7 337 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 OR5J2Q8NH18 312 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 SPZ1Q9BXG8 430 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 GUCA1BQ9UMX6 200 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 HHLA3Q9XRX5 114 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 PRELID1Q9Y255 219 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 RBM7Q9Y580 266 aaKnown RBP1.67□□□□□ -2.14
VPS29-205ENST00000548539 ABCC12Q96J65 1359 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 PXDNLA1KZ92 1463 aa1.67□□□□□ -2.14
VPS29-205ENST00000548539 TRPM6Q9BX84 2022 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 TRAV41A0A0B4J266 112 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 DISC1C4P0D8 188 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 LST1O00453 97 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 DCTN3O75935 186 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 UCHL1P09936 223 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 CA5AP35218 305 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 RAP1GDS1P52306 607 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 NKX2-5P52952 324 aaPredicted RBP1.66□□□□□ -2.14
VPS29-205ENST00000548539 FKBP1AP62942 108 aaKnown RBP1.66□□□□□ -2.14
VPS29-205ENST00000548539 TNFAIP6P98066 277 aaPredicted RBP1.66□□□□□ -2.14
VPS29-205ENST00000548539 TPRXLQ17RH7 258 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 PCOTHQ58A44 107 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 TNFAIP8L3Q5GJ75 292 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 LRRC28Q86X40 367 aaPredicted RBP1.66□□□□□ -2.14
VPS29-205ENST00000548539 SLC22A24Q8N4F4 322 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 OR2T4Q8NH00 348 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 TMA16Q96EY4 203 aaKnown RBP1.66□□□□□ -2.14
VPS29-205ENST00000548539 IMMP2LQ96T52 175 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 TIMM21Q9BVV7 248 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 PRO2289Q9P1D8 64 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 VWDEQ8N2E2 1590 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 CHD5Q8TDI0 1954 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 DSCAMO60469 2012 aa1.66□□□□□ -2.14
VPS29-205ENST00000548539 TMSB15BA0A087X1C1 80 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.65□□□□□ -2.15
VPS29-205ENST00000548539 IGHV1-69-2A0A0G2JMI3 117 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 A8MUN3 132 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 H3BT86 120 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 KLRC4O43908 158 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 NSA2O95478 260 aaKnown RBP1.65□□□□□ -2.15
VPS29-205ENST00000548539 TFPTP0C1Z6 253 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 DEFA4P12838 97 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 UCHL3P15374 230 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 MARCKSL1P49006 195 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 RAB13P51153 203 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 MYL6P60660 151 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms