RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KIR2DL5BA0A0G2JPC4 375 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 A8MWP6 167 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 FABP7O15540 132 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 DIRAS3O95661 229 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 CDK10Q15131 360 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 DEFB135Q30KP9 77 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 KIR2DL5AQ8N109 375 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 FAM89BQ8N5H3 189 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 KIR2DL5BQ8NHK3 375 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 EEF1AKMT3Q96AZ1 226 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 DCUN1D5Q9BTE7 237 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 ZNF430Q9H8G1 570 aaPredicted RBP12.62□□□□□ -0.39
VPS29-204ENST00000548259 PLGRKTQ9HBL7 147 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 MLXQ9UH92 298 aa12.62□□□□□ -0.39
VPS29-204ENST00000548259 A0A0A6YYD4 124 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 TMEM213A2RRL7 107 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 IFNA4P05014 189 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 QRFPP83859 136 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 HSD17B12Q53GQ0 312 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 BTNL8Q6UX41 500 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 LRRTM1Q86UE6 522 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 OR2C3Q8N628 320 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 OR56B1Q8NGI3 324 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 ARHGAP5-AS1Q96IT6 56 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 GINS4Q9BRT9 223 aa12.61□□□□□ -0.39
VPS29-204ENST00000548259 CD3GP09693 182 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 EDN2P20800 178 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 EWSR1Q01844 656 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS29-204ENST00000548259 MRGPRG-AS1Q2M3A8 158 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 CLEC19AQ6UXS0 136 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 VSTM2AQ8TAG5 236 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 RNF183Q96D59 192 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 PECRQ9BY49 303 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 MFFQ9GZY8 342 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 KCNK15Q9H427 330 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 MRPS7Q9Y2R9 242 aaKnown RBP12.6□□□□□ -0.39
VPS29-204ENST00000548259 PRELID3BQ9Y3B1 194 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 DMRT1Q9Y5R6 373 aa12.6□□□□□ -0.39
VPS29-204ENST00000548259 KMT2AQ03164 3969 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 TRBV6-7A0A0A0MS04 114 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 NPIPB5A8MRT5 1133 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 SAA1P0DJI8 122 aaPredicted RBP12.59□□□□□ -0.39
VPS29-204ENST00000548259 MYOD1P15172 320 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 HIST1H1BP16401 226 aaKnown RBP12.59□□□□□ -0.39
VPS29-204ENST00000548259 DUTP33316 252 aaKnown RBP12.59□□□□□ -0.39
VPS29-204ENST00000548259 SPAG8Q99932 426 aaPredicted RBP12.59□□□□□ -0.39
VPS29-204ENST00000548259 CABLES2Q9BTV7 478 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 C6orf62Q9GZU0 229 aaPredicted RBP12.59□□□□□ -0.39
VPS29-204ENST00000548259 MRPL27Q9P0M9 148 aaKnown RBP12.59□□□□□ -0.39
VPS29-204ENST00000548259 UFC1Q9Y3C8 167 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 SELENOKQ9Y6D0 94 aa12.59□□□□□ -0.39
VPS29-204ENST00000548259 TRBV7-1A0A0A6YYK4 115 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 DEFA4P12838 97 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 GALP22466 123 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 TCTAP57738 103 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 P2RY14Q15391 338 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 SSX1Q16384 188 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 IGSF11Q5DX21 431 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 LAMTOR1Q6IAA8 161 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 CEACAM19Q7Z692 300 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 PQLC1Q8N2U9 271 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 CYGBQ8WWM9 190 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 CXorf58Q96LI9 332 aa12.58□□□□□ -0.4
VPS29-204ENST00000548259 IGHV3-23P01764 117 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 MAS1LP35410 378 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 RPL27AP46776 148 aaKnown RBP12.57□□□□□ -0.4
VPS29-204ENST00000548259 ELLP55199 621 aaPredicted RBP12.57□□□□□ -0.4
VPS29-204ENST00000548259 TMEM50BP56557 158 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 INSL4Q14641 139 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 RAB11BQ15907 218 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 ZNF585BQ52M93 769 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 C10orf55Q5SWW7 151 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 FYTTD1Q96QD9 318 aaKnown RBP12.57□□□□□ -0.4
VPS29-204ENST00000548259 OR51E2Q9H255 320 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 C5orf66Q9H5L9 145 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 SLC2A9Q9NRM0 540 aa12.57□□□□□ -0.4
VPS29-204ENST00000548259 HMX3A6NHT5 357 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 FOXI3A8MTJ6 420 aaPredicted RBP12.56□□□□□ -0.4
VPS29-204ENST00000548259 SLC17A2O00624 439 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 FCGR3BO75015 233 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 CDK1P06493 297 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 CD37P11049 281 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 NANOGP1Q8N7R0 232 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 FBLIM1Q8WUP2 373 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 CCDC140Q96MF4 163 aa12.56□□□□□ -0.4
VPS29-204ENST00000548259 SLC22A5O76082 557 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 FCGR3AP08637 254 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 C8orf88P0DMB2 117 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 CD36P16671 472 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 GADD45AP24522 165 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 PSMB6P28072 239 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 ARFRP1Q13795 201 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 RBMS2Q15434 407 aaKnown RBP12.55□□□□□ -0.4
VPS29-204ENST00000548259 AHSA2Q719I0 299 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 KCTD9Q7L273 389 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 RAB3CQ96E17 227 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 GALNT14Q96FL9 552 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 OR2A7Q96R45 310 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 MND1Q9BWT6 205 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 S100A14Q9HCY8 104 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms