RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CGB7P0DN87 165 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 RPL31P62899 125 aaKnown RBP9.12□□□□□ -0.95
CUX1-212ENST00000547394 GCSAMLQ5JQS6 135 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 ZFP82Q8N141 532 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 ZBTB34Q8NCN2 500 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 FAM222BQ8WU58 562 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 IGFBPL1Q8WX77 278 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 S1PR3Q99500 378 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 TMPRSS5Q9H3S3 457 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 CSMD2Q7Z408 3487 aa9.12□□□□□ -0.95
CUX1-212ENST00000547394 ZNF98A6NK75 572 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 F2RL2O00254 374 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 SOX15O60248 233 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 YPEL1O60688 119 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 MMP9P14780 707 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 MRPS11P82912 194 aaKnown RBP9.11□□□□□ -0.95
CUX1-212ENST00000547394 RBPJQ06330 500 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 HFEQ30201 348 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 AWAT1Q58HT5 328 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 C10orf91Q5T1B1 145 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 ZNF383Q8NA42 475 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 RNASE6Q93091 150 aaKnown RBP9.11□□□□□ -0.95
CUX1-212ENST00000547394 YPEL2Q96QA6 119 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 CLCC1Q96S66 551 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 SLC25A22Q9H936 323 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 TMEM140Q9NV12 185 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 STRAPQ9Y3F4 350 aaKnown RBP9.11□□□□□ -0.95
CUX1-212ENST00000547394 MYO18BQ8IUG5 2567 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 ARG1P05089 322 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 ZNF66Q6ZN08 573 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 FAM122AQ96E09 287 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 GNPNAT1Q96EK6 184 aaPredicted RBP9.11□□□□□ -0.95
CUX1-212ENST00000547394 CTSZQ9UBR2 303 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 NDRG3Q9UGV2 375 aa9.11□□□□□ -0.95
CUX1-212ENST00000547394 RBFOX3A6NFN3 312 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 RRHO14718 337 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 DFFBO76075 338 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 SNAPINO95295 136 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 IFNA10P01566 189 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 TNFRSF1AP19438 455 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 HBG1P69891 147 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 HBG2P69892 147 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 ACSM6Q6P461 480 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 TMEM14EPQ6UXP3 125 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 CYB561D1Q8N8Q1 229 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 OR4A16Q8NH70 328 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 C2CD4CQ8TF44 421 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 ZNF251Q9BRH9 671 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 WDR61Q9GZS3 305 aaKnown RBP9.1□□□□□ -0.95
CUX1-212ENST00000547394 TMEM106BQ9NUM4 274 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 IGSF10Q6WRI0 2623 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 FGF7P21781 194 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 PEA15Q15121 130 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 C3orf36Q3SXR2 165 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 AVPI1Q5T686 147 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 GATAD1Q8WUU5 269 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 ZCCHC14Q8WYQ9 949 aaKnown RBP9.1□□□□□ -0.95
CUX1-212ENST00000547394 TAF15Q92804 592 aaKnown RBP eCLIP9.1□□□□□ -0.95
CUX1-212ENST00000547394 RHOVQ96L33 236 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 TOLLIPQ9H0E2 274 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 HEYLQ9NQ87 328 aaPredicted RBP9.1□□□□□ -0.95
CUX1-212ENST00000547394 CISD1Q9NZ45 108 aaKnown RBP9.1□□□□□ -0.95
CUX1-212ENST00000547394 PPIAL4EA0A075B759 164 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 NUDT19A8MXV4 375 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 PPIAL4DF5H284 164 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 TMEM178BH3BS89 294 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 RAB29O14966 203 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 WNT2P09544 360 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 PPIAL4FP0DN26 164 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 RAB5CP51148 216 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 LRRC75BQ2VPJ9 315 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 TMEM200BQ69YZ2 307 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 RCC1LQ96I51 464 aaKnown RBP9.1□□□□□ -0.95
CUX1-212ENST00000547394 C12orf57Q99622 126 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 VKORC1Q9BQB6 163 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 PPIAL4AQ9Y536 164 aa9.1□□□□□ -0.95
CUX1-212ENST00000547394 CELSR2Q9HCU4 2923 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 IGHV3-72A0A0B4J1Y9 119 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 SRRM4A7MD48 611 aaKnown RBP9.09□□□□□ -0.95
CUX1-212ENST00000547394 DVL1O14640 695 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 PAX6P26367 422 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 TRAT1Q6PIZ9 186 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 IDI2-AS1Q9NZ38 188 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 KLF2Q9Y5W3 355 aaPredicted RBP9.09□□□□□ -0.95
CUX1-212ENST00000547394 A0A1W2PPE2 198 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 C15orf62A8K5M9 175 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 PMS2P5A8MQ11 134 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 ZNF727A8MUV8 499 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 HPRT1P00492 218 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 ICAM4Q14773 271 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 NCMAPQ5T1S8 102 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 RPP25LQ8N5L8 163 aaKnown RBP9.09□□□□□ -0.95
CUX1-212ENST00000547394 OR10P1Q8NGE3 313 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 SLC35B3Q9H1N7 401 aa9.09□□□□□ -0.95
CUX1-212ENST00000547394 C7orf77A4D0Y5 90 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 RAB13P51153 203 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 ERVK-16P61578 105 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 CR1LQ2VPA4 569 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 ZNF787Q6DD87 383 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 OR4A47Q6IF82 309 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms