RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 RHOVQ96L33 236 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 BEX1Q9HBH7 125 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 BET1LQ9NYM9 111 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 MMP24Q9Y5R2 645 aa12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 ANK3Q12955 4377 aaKnown RBP12.86□□□□□ -0.35
PRPF40A-212ENST00000545856 FGF16O43320 207 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SSNA1O43805 119 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 S1PR2O95136 353 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 NDUFA3O95167 84 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 IGKV1D-33P01593 117 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 IGKV1-33P01594 117 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 IGKV1-16P04430 117 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SNRNP70P08621 437 aaKnown RBP12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SRD5A1P18405 259 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 ANKRD55Q3KP44 614 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SP6Q3SY56 376 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 RBMS3Q6XE24 437 aaKnown RBP12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SELENOHQ8IZQ5 122 aaKnown RBP12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 TEX45Q8NA69 505 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 NPBQ8NG41 125 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 C17orf50Q8WW18 174 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 ZDHHC16Q969W1 377 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 R3HDM4Q96D70 268 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SEC22AQ96IW7 307 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 EAF1Q96JC9 268 aaPredicted RBP12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 GPHA2Q96T91 129 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 SSX3Q99909 188 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 MED28Q9H204 178 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 KIAA1456Q9P272 454 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 TCF19Q9Y242 345 aa12.85□□□□□ -0.35
PRPF40A-212ENST00000545856 OR2F2O95006 317 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 P0C879 139 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 RPS16P62249 146 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 DEFB112Q30KQ8 113 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 NMSQ5H8A3 153 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 SLC35G3Q8N808 338 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 OR52B4Q8NGK2 314 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 CHAC2Q8WUX2 184 aa12.84□□□□□ -0.35
PRPF40A-212ENST00000545856 A0A1B0GU03 582 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 CLDN34H7C241 214 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 NBR2O15453 112 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 IGKV1-39P01597 117 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 IGKV1D-39P04432 117 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 TMEM11P17152 192 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 MAS1LP35410 378 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 IER3P46695 156 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 RPL15P61313 204 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 RRAS2P62070 204 aaPredicted RBP12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 CYCSP99999 105 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 HES1Q14469 280 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 OR2B11Q5JQS5 317 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 H2BFWTQ7Z2G1 175 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 FOXRED2Q8IWF2 684 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 PUSL1Q8N0Z8 303 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 DMBX1Q8NFW5 382 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 OR5M8Q8NGP6 311 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 RNASE11Q8TAA1 199 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 LHFPL5Q8TAF8 219 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 JMJD8Q96S16 334 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 ZFP57Q9NU63 452 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 FKBP11Q9NYL4 201 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 TNCP24821 2201 aa12.83□□□□□ -0.36
PRPF40A-212ENST00000545856 OR2A4O95047 310 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 LY86O95711 162 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 IL6RP08887 468 aaPredicted RBP12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 LINC00205P59089 165 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 AARDQ4LEZ3 155 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 THOC7Q6I9Y2 204 aaKnown RBP12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 TMEM167AQ8TBQ9 72 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 PIFOQ8TCI5 191 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 ZNF418Q8TF45 676 aaPredicted RBP12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 RBM14Q96PK6 669 aaKnown RBP12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 OR2A7Q96R45 310 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 VPREB3Q9UKI3 123 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 MOB4Q9Y3A3 225 aa12.82□□□□□ -0.36
PRPF40A-212ENST00000545856 IGHV3-72A0A0B4J1Y9 119 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 A6NDX4 124 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 FAM90A26D6RGX4 464 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 H3BUX3 64 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 RRHO14718 337 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 KBTBD11O94819 623 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 KRASP01116 189 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 IGLV2-23P01705 113 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 FAM157CP0CG43 387 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 SULT1A3P0DMM9 295 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 SULT1A4P0DMN0 295 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 MMDQ15546 238 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 OR4A47Q6IF82 309 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 ZNF429Q86V71 674 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 MMD2Q8IY49 270 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 SMR3AQ99954 134 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 TMEM140Q9NV12 185 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 PRNDQ9UKY0 176 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 HMX3A6NHT5 357 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 SNAPC5O75971 98 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 IGKV1-5P01602 117 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 SAA1P0DJI8 122 aaPredicted RBP12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 SMCO1Q147U7 214 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 PSG5Q15238 335 aa12.81□□□□□ -0.36
PRPF40A-212ENST00000545856 GSG1LQ6UXU4 331 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms