RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SLC45A2Q9UMX9 530 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 PLCE1Q9P212 2302 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 VENTXO95231 258 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 KLF3P57682 345 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-215ENST00000544547 RAC3P60763 192 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 FAM27BQ5VT28 67 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 Q8IYB0 196 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 PLXNB3Q9ULL4 1909 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 J3QR89 54 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 BLNKQ8WV28 456 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 ZDHHC16Q969W1 377 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 FAM131CQ96AQ9 280 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 COL6A6A6NMZ7 2263 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 DENND4CQ5VZ89 1909 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 CELA2AP08217 269 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 FBLN7Q53RD9 439 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 NEU1Q99519 415 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 FZR1Q9UM11 496 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 SCO2A0A1W2PP80 73 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 IFI6P09912 130 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 CRYBB3P26998 211 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 COMPP49747 757 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-215ENST00000544547 ABHD3Q8WU67 409 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 FAM216AQ8WUB2 273 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 OCIAD1Q9NX40 245 aa12.13□□□□□ -0.47
LIMS1-215ENST00000544547 SOX8P57073 446 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 PMCHL1Q16048 86 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 SPINK14Q6IE38 97 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 RPP25LQ8N5L8 163 aaKnown RBP12.12□□□□□ -0.47
LIMS1-215ENST00000544547 DERL1Q9BUN8 251 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 TMEM38BQ9NVV0 291 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 CLDN16Q9Y5I7 305 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 FA2HQ7L5A8 372 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 TMEM56Q96MV1 263 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 TMEM56-RWDD3S4R434 201 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 A0A0J9YW62 118 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 CCL3P10147 92 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 GZMHP20718 246 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 RND2P52198 227 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 RIPPLY3P57055 190 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 UBE2L3P68036 154 aaKnown RBP12.12□□□□□ -0.47
LIMS1-215ENST00000544547 RELBQ01201 579 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 DNLZQ5SXM8 178 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 FAM162BQ5T6X4 162 aa12.12□□□□□ -0.47
LIMS1-215ENST00000544547 OR5B21A6NL26 309 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 COX7A2P2O60397 106 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 FGF12P61328 243 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 GCSAMLQ5JQS6 135 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 IBA57Q5T440 356 aaKnown RBP12.11□□□□□ -0.47
LIMS1-215ENST00000544547 LYG1Q8N1E2 194 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 PRSS3P2Q8NHM4 247 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 SGK494Q96LW2 274 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 OR8B2Q96RD0 313 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 FER1L5A0AVI2 2057 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 NDUFB3O43676 98 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 HTR1DP28221 377 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 OR8B3Q8NGG8 313 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 UMODP07911 640 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 MOB1BQ7L9L4 216 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 MOB3BQ86TA1 216 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 BPIFA4PQ86YQ2 179 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 LRTM2Q8N967 370 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 OR5A2Q8NGI9 324 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 LIME1Q9H400 295 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 MT-ND6P03923 174 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 PPOXP50336 477 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 MAJINQ3KP22 176 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 ZNF501Q96CX3 271 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-215ENST00000544547 CHRDL1Q9BU40 450 aa12.11□□□□□ -0.47
LIMS1-215ENST00000544547 LAMA2P24043 3122 aaKnown RBP12.11□□□□□ -0.47
LIMS1-215ENST00000544547 PFN1P07737 140 aaKnown RBP12.1□□□□□ -0.47
LIMS1-215ENST00000544547 FOXA3P55318 350 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-215ENST00000544547 AESQ08117 197 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 PRR31Q5SQ13 230 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 NIT1Q86X76 327 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 OR52L2PQ8NGH6 319 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 POM121L2Q96KW2 1035 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 GAL3ST2Q9H3Q3 398 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 HES4Q9HCC6 221 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 RHBDL1O75783 438 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 IL15RAQ13261 267 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 TRIP6Q15654 476 aaKnown RBP12.1□□□□□ -0.47
LIMS1-215ENST00000544547 SLC25A34Q6PIV7 304 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 MBD3L1Q8WWY6 194 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 NPCDR1Q9BY65 106 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 TCFL5Q9UL49 500 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 CEACAM18A8MTB9 384 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 C3orf80F5H4A9 247 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 NEURL1O76050 574 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 TMEM50AO95807 157 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 SLC25A5P05141 298 aaKnown RBP12.1□□□□□ -0.47
LIMS1-215ENST00000544547 CDKN1AP38936 164 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 BPIFB3P59826 476 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 LRRC10Q5BKY1 277 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 LCN12Q6JVE5 192 aa12.1□□□□□ -0.47
LIMS1-215ENST00000544547 RNASEH2CQ8TDP1 164 aaKnown RBP12.1□□□□□ -0.47
LIMS1-215ENST00000544547 SLC23A3Q6PIS1 610 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 CCL17Q92583 94 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 S1PR2O95136 353 aa12.09□□□□□ -0.47
LIMS1-215ENST00000544547 COX19Q49B96 90 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms