RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 MLNRO43193 412 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 SPINT2O43291 252 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 CPSF4O95639 269 aaKnown RBP7.52□□□□□ -1.21
VPS13D-212ENST00000543766 FCGR3AP08637 254 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 WFDC2Q14508 124 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 TMEM52BQ4KMG9 183 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 VSTM2AQ8TAG5 236 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 WDR61Q9GZS3 305 aaKnown RBP7.52□□□□□ -1.21
VPS13D-212ENST00000543766 KCNIP2Q9NS61 270 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 LHX3Q9UBR4 397 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 TEX22C9J3V5 150 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 ANGPTL7O43827 346 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 APOMO95445 188 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 HIST1H1CP16403 213 aaKnown RBP7.51□□□□□ -1.21
VPS13D-212ENST00000543766 SSR4P51571 173 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 TBR1Q16650 682 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF791Q3KP31 576 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-212ENST00000543766 Q56UQ5 140 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 LEG1Q6P5S2 330 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 COX18Q8N8Q8 333 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 SLC25A40Q8TBP6 338 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 C1orf159Q96HA4 380 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 C1QTNF5Q9BXJ0 243 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 RCL1Q9Y2P8 373 aaKnown RBP7.51□□□□□ -1.21
VPS13D-212ENST00000543766 CSN3P07498 182 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 ADMP35318 185 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 PSMB3P49720 205 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 FNDC7Q5VTL7 733 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 PRR22Q8IZ63 422 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 OR8S1Q8NH09 359 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF417Q8TAU3 575 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 WFDC6Q9BQY6 131 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 LINC00597Q9H2U6 94 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 ST20Q9HBF5 79 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 RALGAPA1Q6GYQ0 2036 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 C5orf42Q9H799 3197 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 POLEQ07864 2286 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 DPRXA6NFQ7 191 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 PPP1R3DO95685 299 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 TNFRSF4P43489 277 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 XGP55808 180 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 SRYQ05066 204 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 RUNX3Q13761 415 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 GGTLC2Q14390 218 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 BVES-AS1Q5T3Y7 98 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 MBD3L2Q8NHZ7 208 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-212ENST00000543766 SSC4DQ8WTU2 575 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 EBPLQ9BY08 206 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 CSAG2Q9Y5P2 127 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 MED13Q9UHV7 2174 aa7.51□□□□□ -1.21
VPS13D-212ENST00000543766 PLXNB1O43157 2135 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 TRAV5A0A0B4J249 113 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 CCL24O00175 119 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 CHEK1O14757 476 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 LINC01620Q4KN68 170 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 OR51T1Q8NGJ9 327 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 OR4C3Q8NH37 302 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 EEF1AKMT3Q96AZ1 226 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 GFI1Q99684 422 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 SCRT1Q9BWW7 348 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 PLEKHF2Q9H8W4 249 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 MANBALQ9NQG1 85 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 CYTL1Q9NRR1 136 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 A0A087X0K7 114 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 SMIM28A0A1B0GU29 152 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 A0A1W2PS29 197 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 SLC25A34Q6PIV7 304 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 MRPL55Q7Z7F7 128 aaKnown RBP7.5□□□□□ -1.21
VPS13D-212ENST00000543766 ABHD12Q8N2K0 398 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 TTC9CQ8N5M4 171 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 SDF2Q99470 211 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 DEPPQ9NTK1 212 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 ZG16O60844 167 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 VPREB1P12018 145 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 HLA-DRB3P79483 266 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 ADAMTSL4Q6UY14 1074 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 OR5AK2Q8NH90 309 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 OR51E1Q8TCB6 317 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 CARD19Q96LW7 228 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF257Q9Y2Q1 563 aa7.5□□□□□ -1.21
VPS13D-212ENST00000543766 KLK5Q9Y337 293 aaPredicted RBP7.5□□□□□ -1.21
VPS13D-212ENST00000543766 OOSP1A8MZH6 123 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 H3BTX0 84 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 FCN1O00602 326 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 DHHO43323 396 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 CTSEP14091 401 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 KIR2DS2P43631 304 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 CSN1S1P47710 185 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 P2RX1P51575 399 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 ZNF146Q15072 292 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 PHLDA2Q53GA4 152 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 PPP1R27Q86WC6 154 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 PDFQ9HBH1 243 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 DOCK7Q96N67 2140 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 INSL3P51460 131 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 DMKNQ6E0U4 476 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-212ENST00000543766 GNPNAT1Q96EK6 184 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-212ENST00000543766 SIGLEC8Q9NYZ4 499 aa7.49□□□□□ -1.21
VPS13D-212ENST00000543766 TIMM8BQ9Y5J9 83 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-212ENST00000543766 U3KQE9 123 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 166 ms