RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DEDDO75618 318 aa13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 SAA1P0DJI8 122 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 FAM209BQ5JX69 171 aa13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 ZNF57Q68EA5 555 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 C10orf67Q8IYJ2 551 aa13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 OR10J5Q8NHC4 309 aa13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 OSR1Q8TAX0 266 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 FKBP14Q9NWM8 211 aa13.27□□□□□ -0.29
CLSTN3-214ENST00000542663 HMX3A6NHT5 357 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 A8MWP6 167 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 SCAF4O95104 1147 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 IGHV3-23P01764 117 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 FCGR3AP08637 254 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 GNAO1P09471 354 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 CDK10Q15131 360 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 PLGRKTQ9HBL7 147 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 PLCXD1Q9NUJ7 323 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 ZNF257Q9Y2Q1 563 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 S4R3C0 116 aa13.26□□□□□ -0.29
CLSTN3-214ENST00000542663 TEX22C9J3V5 150 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 NDUFB8O95169 186 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 ARL3P36405 182 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 CLDN12P56749 244 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 PLA2G7Q13093 441 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 TPBGQ13641 420 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 TM4SF20Q53R12 229 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 CLEC19AQ6UXS0 136 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 MMD2Q8IY49 270 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 UXS1Q8NBZ7 420 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 MAFIPQ8WZ33 124 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 ADTRPQ96IZ2 230 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 FBXL7Q9UJT9 491 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 TP53TG1Q9Y2A0 90 aa13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 LSM2Q9Y333 95 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-214ENST00000542663 E7EUB6 86 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 SPRY2O43597 315 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 DIRAS3O95661 229 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 CDK1P06493 297 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 DEFB135Q30KP9 77 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 BTNL8Q6UX41 500 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 Q6ZWC4 215 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 DHRSXQ8N5I4 330 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 OR56B1Q8NGI3 324 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 FBLIM1Q8WUP2 373 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 FANCD2OSQ96PS1 177 aa13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 AK6Q9Y3D8 172 aaKnown RBP13.24□□□□□ -0.29
CLSTN3-214ENST00000542663 DNAH6Q9C0G6 4158 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 A0A1B0GW64 132 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 ZNF320A2RRD8 509 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 NPIPB5A8MRT5 1133 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 EBAG9O00559 213 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 ACTL6BO94805 426 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 IL6RP08887 468 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 ATF4P18848 351 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 BMI1P35226 326 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 RAB11BQ15907 218 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 TMEM91Q6ZNR0 172 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 SLC25A42Q86VD7 318 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 H1FOOQ8IZA3 346 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 BPIFB6Q8NFQ5 453 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 MND1Q9BWT6 205 aa13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 KLK5Q9Y337 293 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 RBM7Q9Y580 266 aaKnown RBP13.23□□□□□ -0.29
CLSTN3-214ENST00000542663 CREBL2O60519 120 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 ANKRD55Q3KP44 614 aa13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 C2orf76Q3KRA6 126 aa13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 FAM106AQ4KMX7 169 aa13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 LGALS9CQ6DKI2 356 aa13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 C8orf59Q8N0T1 100 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 VKORC1L1Q8N0U8 176 aa13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 FAM3DQ96BQ1 224 aa13.22□□□□□ -0.29
CLSTN3-214ENST00000542663 IGKV1D-8A0A087WSZ0 117 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 TMEM272A0A1B0GTI8 110 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 DENRO43583 198 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 FCGR3BO75015 233 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 ZNF735P0CB33 412 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 C8orf88P0DMB2 117 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 RPL30P62888 115 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 MRPS15P82914 257 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 KLK9Q2XQG4 91 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 UNQ9165/PRO28630Q6UXU0 137 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 TMEM203Q969S6 136 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 GINS4Q9BRT9 223 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 KLK9Q9UKQ9 250 aa13.21□□□□□ -0.29
CLSTN3-214ENST00000542663 TRAV25A0A0B4J276 109 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 CRYGCP07315 174 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 AREGP15514 252 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 APOC4P55056 127 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 SPHARQ15513 63 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 LIPKQ5VXJ0 399 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 OR4A47Q6IF82 309 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 OR1L6Q8NGR2 347 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 RNF183Q96D59 192 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 RAB3CQ96E17 227 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 FYTTD1Q96QD9 318 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 OR51E2Q9H255 320 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 SLC2A9Q9NRM0 540 aa13.2□□□□□ -0.3
CLSTN3-214ENST00000542663 MFNGO00587 321 aa13.19□□□□□ -0.3
CLSTN3-214ENST00000542663 KBTBD11O94819 623 aa13.19□□□□□ -0.3
CLSTN3-214ENST00000542663 IGLV2-14P01704 120 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms