RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 LDLRAD2Q5SZI1 272 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 CCDC144NLQ6NUI1 221 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 FAM71E2Q8N5Q1 922 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 GRPEL2Q8TAA5 225 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 Q96MF0 132 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 TNFSF18Q9UNG2 199 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 AUP1Q9Y679 476 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 SHOXO15266 292 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 ARPC5O15511 151 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 HABP2Q14520 560 aaPredicted RBP14.33□□□□□ -0.12
CLIP1-215ENST00000541108 IZUMO4Q1ZYL8 232 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 AARDQ4LEZ3 155 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 CXorf66Q5JRM2 361 aaPredicted RBP14.33□□□□□ -0.12
CLIP1-215ENST00000541108 MALSU1Q96EH3 234 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 FOXC2Q99958 501 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 HIF1ANQ9NWT6 349 aa14.33□□□□□ -0.12
CLIP1-215ENST00000541108 LSM5Q9Y4Y9 91 aaKnown RBP14.33□□□□□ -0.12
CLIP1-215ENST00000541108 A0A1W2PPI3 338 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 E5RGE8 158 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 IL6RP08887 468 aaPredicted RBP14.32□□□□□ -0.12
CLIP1-215ENST00000541108 LGALS7P47929 136 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 ZNF345Q14585 488 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 MOB3BQ86TA1 216 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 FOXRED2Q8IWF2 684 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 PDZD9Q8IXQ8 264 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 INO80EQ8NBZ0 244 aaPredicted RBP14.32□□□□□ -0.12
CLIP1-215ENST00000541108 RNF5Q99942 180 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 C7orf69Q9H7B7 122 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 TMEM140Q9NV12 185 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 OR5AC2Q9NZP5 309 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 NSG2Q9Y328 171 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 HSPB11Q9Y547 144 aa14.32□□□□□ -0.12
CLIP1-215ENST00000541108 CENPVL3A0A0U1RRI6 287 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 PVALBP20472 110 aaPredicted RBP14.31□□□□□ -0.12
CLIP1-215ENST00000541108 OR4A47Q6IF82 309 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 ACOT7LQ6ZUV0 252 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 SSX9Q7RTT3 188 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 LHFPL4Q7Z7J7 247 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 VKORC1L1Q8N0U8 176 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 DCUN1D4Q92564 292 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 HARBI1Q96MB7 349 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 MFFQ9GZY8 342 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 BET1LQ9NYM9 111 aa14.31□□□□□ -0.12
CLIP1-215ENST00000541108 SRRM4A7MD48 611 aaKnown RBP14.3□□□□□ -0.12
CLIP1-215ENST00000541108 J3QLI3 93 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 OR2F2O95006 317 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 C4BPBP20851 252 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 CD1BP29016 333 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 OR2F1Q13607 317 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 ZNF429Q86V71 674 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 VSTM2AQ8TAG5 236 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 MS4A7Q9GZW8 240 aaPredicted RBP14.3□□□□□ -0.12
CLIP1-215ENST00000541108 HSPB7Q9UBY9 170 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 RCL1Q9Y2P8 373 aaKnown RBP14.3□□□□□ -0.12
CLIP1-215ENST00000541108 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.3□□□□□ -0.122e-6■■□□□ 13.9
CLIP1-215ENST00000541108 UNC79Q9P2D8 2635 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 A0A0D9SG52 128 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 L7N2F9 121 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 WRBO00258 174 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 OR9G9P0C7N8 305 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 CXCL2P19875 107 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 NUP62P37198 522 aaPredicted RBP14.3□□□□□ -0.12
CLIP1-215ENST00000541108 RPS16P62249 146 aaKnown RBP14.3□□□□□ -0.12
CLIP1-215ENST00000541108 POLR2GP62487 172 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLIP1-215ENST00000541108 RELBQ01201 579 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 TMEM249Q2WGJ8 235 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 OR52E5Q8NH55 327 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 OR4A16Q8NH70 328 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 HILPDAQ9Y5L2 63 aa14.3□□□□□ -0.12
CLIP1-215ENST00000541108 MAP1AP78559 2803 aaPredicted RBP14.29□□□□□ -0.12
CLIP1-215ENST00000541108 A0A1W2PRD5 423 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 A0A1W2PRF3 423 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 A0A1W2PRM7 423 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 TIMM23O14925 209 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 NPFFO15130 113 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 SYNGR2O43760 224 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 RBMXL2O75526 392 aaKnown RBP14.29□□□□□ -0.12
CLIP1-215ENST00000541108 MED6O75586 246 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 P2RY1P47900 373 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 TNFRSF9Q07011 255 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 SSX2Q16385 188 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 PUSL1Q8N0Z8 303 aaKnown RBP14.29□□□□□ -0.12
CLIP1-215ENST00000541108 OR4A5Q8NH83 315 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 CFHR4Q92496 578 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 AQP10Q96PS8 301 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 RAB40CQ96S21 281 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 C11orf1Q9H5F2 150 aa14.29□□□□□ -0.12
CLIP1-215ENST00000541108 IGHV3-72A0A0B4J1Y9 119 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 IGHV1-69DA0A0B4J2H0 117 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 RNF222A6NCQ9 220 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 CHST1O43916 411 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 TGFAP01135 160 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 IGHV1-69P01742 117 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 FGF2P09038 288 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 SAA4P35542 130 aa14.28□□□□□ -0.12
CLIP1-215ENST00000541108 PDLIM3Q53GG5 364 aaPredicted RBP14.28□□□□□ -0.12
CLIP1-215ENST00000541108 LY86O95711 162 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 IGLV2-23P01705 113 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 SAA1P0DJI8 122 aaPredicted RBP14.27□□□□□ -0.12
CLIP1-215ENST00000541108 IGHV4-31P0DP07 118 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms