RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SLA2Q9H6Q3 261 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 PRELID3BQ9Y3B1 194 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 K7EIL1 84 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 HOXD3P31249 432 aaPredicted RBP10.97□□□□□ -0.65
USP28-209ENST00000540925 PRSS3P35030 304 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 ZNF616Q08AN1 781 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 PUSL1Q8N0Z8 303 aaKnown RBP10.97□□□□□ -0.65
USP28-209ENST00000540925 POC5Q8NA72 575 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 OR1N2Q8NGR9 330 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 OR4S2Q8NH73 311 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 SECTM1Q8WVN6 248 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 OR5B12Q96R08 314 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 ALX4Q9H161 411 aaPredicted RBP10.97□□□□□ -0.65
USP28-209ENST00000540925 ZNF430Q9H8G1 570 aaPredicted RBP10.97□□□□□ -0.65
USP28-209ENST00000540925 SCPEP1Q9HB40 452 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 IFT46Q9NQC8 304 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 TAS2R8Q9NYW2 309 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 SCOCQ9UIL1 159 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 ADAM30Q9UKF2 790 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 MRPS7Q9Y2R9 242 aaKnown RBP10.97□□□□□ -0.65
USP28-209ENST00000540925 RYR3Q15413 4870 aa10.97□□□□□ -0.65
USP28-209ENST00000540925 RBFOX2O43251 390 aaKnown RBP eCLIP10.96□□□□□ -0.65
USP28-209ENST00000540925 HPGDSO60760 199 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 CNIH1O95406 144 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 OR8U8P0C7N1 319 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 ZNF182P17025 639 aaPredicted RBP10.96□□□□□ -0.65
USP28-209ENST00000540925 RFX2P48378 723 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 OR2B11Q5JQS5 317 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 ZNF818PQ6ZRF7 136 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 TCTEX1D2Q8WW35 142 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 SRSF12Q8WXF0 261 aaKnown RBP10.96□□□□□ -0.65
USP28-209ENST00000540925 MOB3AQ96BX8 217 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 SLC5A7Q9GZV3 580 aa10.96□□□□□ -0.65
USP28-209ENST00000540925 WI2-2373I1.2A0A1W2PRP0 233 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 MSGN1A6NI15 193 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 RAMP3O60896 148 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 RBMXL2O75526 392 aaKnown RBP10.95□□□□□ -0.66
USP28-209ENST00000540925 KBTBD11O94819 623 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 IL6RP08887 468 aaPredicted RBP10.95□□□□□ -0.66
USP28-209ENST00000540925 GNRHRP30968 328 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 KIR2DS2P43631 304 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 TAS2R46P59540 309 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 POU2AF1Q16633 256 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 GPR141Q7Z602 305 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 MMD2Q8IY49 270 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 VKORC1L1Q8N0U8 176 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 ADAD2Q8NCV1 583 aaKnown RBP10.95□□□□□ -0.66
USP28-209ENST00000540925 OR5T1Q8NG75 326 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 TMEM167AQ8TBQ9 72 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 MS4A10Q96PG2 267 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 TINAGL1Q9GZM7 467 aaPredicted RBP10.95□□□□□ -0.66
USP28-209ENST00000540925 EHFQ9NZC4 300 aa10.95□□□□□ -0.66
USP28-209ENST00000540925 IGHV4OR15-8A0A075B7B6 117 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 A0A087WW49 117 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 A0A1B0GW64 132 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 SULT1C2O00338 296 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 TNFSF12O43508 249 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 TPPPO94811 219 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 PMP2P02689 132 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 TRGV3P03979 118 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 HRH1P35367 487 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 RAB25P57735 213 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 TPPP2P59282 170 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 FXYD4P59646 89 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 SPCS2Q15005 226 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 TNXAQ16473 311 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 C10orf55Q5SWW7 151 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 MRAPQ8TCY5 172 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 AP3S1Q92572 193 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 FXYD6Q9H0Q3 95 aa10.94□□□□□ -0.66
USP28-209ENST00000540925 SMIM31A0A1B0GVY4 71 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 TEX22C9J3V5 150 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 LINC01619G3V211 115 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 CREBL2O60519 120 aaPredicted RBP10.93□□□□□ -0.66
USP28-209ENST00000540925 OR2A4O95047 310 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 IGHV3-11P01762 117 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 HSPB1P04792 205 aaKnown RBP10.93□□□□□ -0.66
USP28-209ENST00000540925 CD40LGP29965 261 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 HERV-K104P61576 105 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 C9orf66Q5T8R8 295 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 MZT2AQ6P582 158 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 TMEM17Q86X19 198 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 SPAG16Q8N0X2 631 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 OR5H2Q8NGV7 314 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 VSTM2AQ8TAG5 236 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 DCUN1D4Q92564 292 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 DPF1Q92782 380 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 DLX4Q92988 240 aaPredicted RBP10.93□□□□□ -0.66
USP28-209ENST00000540925 OR2A7Q96R45 310 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 ZNF2Q9BSG1 426 aaPredicted RBP10.93□□□□□ -0.66
USP28-209ENST00000540925 DCUN1D5Q9BTE7 237 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 MIXL1Q9H2W2 232 aa10.93□□□□□ -0.66
USP28-209ENST00000540925 HUWE1Q7Z6Z7 4374 aaKnown RBP10.92□□□□□ -0.66
USP28-209ENST00000540925 TRBV9A0A0B4J1U6 114 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 SEC14L6B5MCN3 397 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 E7EUB6 86 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 HRASP01112 189 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 FGF2P09038 288 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 OR9G9P0C7N8 305 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 ZNF735P0CB33 412 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms