RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-208	ENST00000540438	OR8U8	P0C7N1	319 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	GATA2	P23769	480 aa	Predicted RBP	13.98	□□□□□ -0.17
USP28-208	ENST00000540438	MEOX2	P50222	304 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	RNF212	Q495C1	297 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	CCL17	Q92583	94 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	SMIM7	Q9BQ49	75 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	CALY	Q9NYX4	217 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	TP53TG5	Q9Y2B4	290 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	HSPB1	P04792	205 aa	Known RBP	13.98	□□□□□ -0.17
USP28-208	ENST00000540438	CCL3L1	P16619	93 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	P2RY6	Q15077	328 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	CT45A1	Q5HYN5	189 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	LHFPL4	Q7Z7J7	247 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	ZNF561	Q8N587	486 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	PRSS33	Q8NF86	280 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	CT45A3	Q8NHU0	189 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	CA5BP1	Q8WTZ4	195 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	GCM1	Q9NP62	436 aa		13.98	□□□□□ -0.17
USP28-208	ENST00000540438	ACTL6B	O94805	426 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	CD81	P60033	236 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	TMEM41B	Q5BJD5	291 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	MIC13	Q5XKP0	118 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	TRBV23-1	A0A0A0MS06	115 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	IGKV1-16	P04430	117 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	CD82	P27701	267 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	HOXA1	P49639	335 aa	Predicted RBP	13.97	□□□□□ -0.17
USP28-208	ENST00000540438	RHEB	Q15382	184 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	NPCDR1	Q9BY65	106 aa		13.97	□□□□□ -0.17
USP28-208	ENST00000540438	HRNR	Q86YZ3	2850 aa	Predicted RBP	13.97	□□□□□ -0.17
USP28-208	ENST00000540438	SAA2-SAA4	A0A096LPE2	208 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	C15orf62	A8K5M9	175 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	SAA2	P0DJI9	122 aa	Predicted RBP	13.96	□□□□□ -0.17
USP28-208	ENST00000540438	AGA	P20933	346 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	PRSS8	Q16651	343 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	ZNF709	Q8N972	641 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	WASF3	Q9UPY6	502 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	ZFHX3	Q15911	3703 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	C5orf52	A6NGY3	159 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	LYNX1	G3V0Z9	82 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	IGHV1-46	P01743	117 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	LYNX1	P0DP58	116 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	SLC25A6	P12236	298 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	CEACAM1	P13688	526 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	CCKAR	P32238	428 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	EIF4EBP1	Q13541	118 aa	Predicted RBP	13.96	□□□□□ -0.17
USP28-208	ENST00000540438	DIAPH2-AS1	Q14236	149 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	HEPN1	Q6WQI6	88 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	H1FX	Q92522	213 aa	Known RBP	13.96	□□□□□ -0.17
USP28-208	ENST00000540438	OR6C3	Q9NZP0	311 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	VPS13C	Q709C8	3753 aa		13.96	□□□□□ -0.17
USP28-208	ENST00000540438	MBD3L4	A6NDZ8	208 aa	Predicted RBP	13.96	□□□□□ -0.18
USP28-208	ENST00000540438	MBD3L3	A6NE82	208 aa	Predicted RBP	13.96	□□□□□ -0.18
USP28-208	ENST00000540438	MBD3L5	A6NJ08	208 aa	Predicted RBP	13.96	□□□□□ -0.18
USP28-208	ENST00000540438	HBE1	P02100	147 aa		13.96	□□□□□ -0.18
USP28-208	ENST00000540438	LOXL3	P58215	753 aa		13.96	□□□□□ -0.18
USP28-208	ENST00000540438	MBNL2	Q5VZF2	373 aa	Known RBP	13.96	□□□□□ -0.18
USP28-208	ENST00000540438	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	13.96	□□□□□ -0.18
USP28-208	ENST00000540438	S1PR3	Q99500	378 aa		13.96	□□□□□ -0.18
USP28-208	ENST00000540438	IFI27L2	Q9H2X8	130 aa		13.96	□□□□□ -0.18
USP28-208	ENST00000540438	TMEM140	Q9NV12	185 aa		13.96	□□□□□ -0.18
USP28-208	ENST00000540438	PMS2P5	A8MQ11	134 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	CLN5	O75503	358 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	CHRNA7	P36544	502 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	ATP5G3	P48201	142 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	C1orf185	Q5T7R7	199 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	RHOV	Q96L33	236 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	PAX6	P26367	422 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	KHDC3L	Q587J8	217 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	WFIKKN1	Q96NZ8	548 aa		13.95	□□□□□ -0.18
USP28-208	ENST00000540438	FAM87A	P0C7U9	286 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	SPATA31B1P	Q5VZV4	182 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	CENPE	Q02224	2701 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438		A0A0G2JNJ9	132 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438		J3QW42	95 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	MGST3	O14880	152 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	CD40	P25942	277 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	C17orf58	Q2M2W7	97 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	MS4A5	Q9H3V2	200 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438		Q9UFV3	132 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	GAB2	Q9UQC2	676 aa		13.94	□□□□□ -0.18
USP28-208	ENST00000540438	IGHV3-72	A0A0B4J1Y9	119 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438		P0C879	139 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	TIMM23B	Q5SRD1	257 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	TMEM170A	Q8WVE7	144 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	LURAP1	Q96LR2	239 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	TMEM147	Q9BVK8	224 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	DOK5	Q9P104	306 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	RAI1	Q7Z5J4	1906 aa	Predicted RBP	13.93	□□□□□ -0.18
USP28-208	ENST00000540438		Q6ZS92	163 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	DOLPP1	Q86YN1	238 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	C1orf162	Q8NEQ5	155 aa	Predicted RBP	13.93	□□□□□ -0.18
USP28-208	ENST00000540438	CD1B	P29016	333 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	GLRX	P35754	106 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	BSPH1	Q075Z2	132 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	SP5	Q6BEB4	398 aa	Predicted RBP	13.93	□□□□□ -0.18
USP28-208	ENST00000540438	OR10W1	Q8NGF6	305 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	HSD17B10	Q99714	261 aa	Known RBP	13.93	□□□□□ -0.18
USP28-208	ENST00000540438	ZNF251	Q9BRH9	671 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	GPR61	Q9BZJ8	451 aa		13.93	□□□□□ -0.18
USP28-208	ENST00000540438	EGLN1	Q9GZT9	426 aa		13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms