RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 RAB12Q6IQ22 244 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 ZNF529Q6P280 563 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 C19orf35Q6ZS72 473 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 ZNF383Q8NA42 475 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 OR51A2Q8NGJ7 313 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 OR5D14Q8NGL3 314 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 GALMQ96C23 342 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 NRBF2Q96F24 287 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 PELI1Q96FA3 418 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 CYYR1Q96J86 154 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 HARBI1Q96MB7 349 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 C17orf77Q96MU5 243 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 METTL9Q9H1A3 318 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 ZNF556Q9HAH1 456 aa4.6□□□□□ -1.67
CD44-237ENST00000534082 IGHV3-35A0A0C4DH35 117 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 ZNF705EA8MWA4 302 aaPredicted RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 KRTAP29-1A8MX34 341 aaPredicted RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 TGOLN2O43493 480 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 CA11O75493 328 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 GPX5O75715 221 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 SC5DO75845 299 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 SMR3BP02814 79 aaPredicted RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 CTSDP07339 412 aaPredicted RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 GSTT2P0CG29 244 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 GSTT2BP0CG30 244 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 HSD17B1P14061 328 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 RAB3AP20336 220 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 NPY1RP25929 384 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 FAM3BP58499 235 aaPredicted RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 PRSS8Q16651 343 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 TEPPQ6URK8 271 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 GID4Q8IVV7 300 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 C10orf67Q8IYJ2 551 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 TTC9CQ8N5M4 171 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 PARP16Q8N5Y8 322 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 TMEM163Q8TC26 289 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 MRPL30Q8TCC3 161 aaKnown RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 IL1F10Q8WWZ1 152 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 ACOT12Q8WYK0 555 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 TMEM190Q8WZ59 177 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 EEF1AKMT3Q96AZ1 226 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 NSL1Q96IY1 281 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 FAM210BQ96KR6 192 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 JAM3Q9BX67 310 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 SLC35D1Q9NTN3 355 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 ZNF446Q9NWS9 450 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 H2AFY2Q9P0M6 372 aaPredicted RBP4.59□□□□□ -1.67
CD44-237ENST00000534082 TMED3Q9Y3Q3 217 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 PEX16Q9Y5Y5 336 aa4.59□□□□□ -1.67
CD44-237ENST00000534082 A0A1B0GW64 132 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 UBE2QL1A1L167 161 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 OR4C45A6NMZ5 311 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 MRPS14O60783 128 aaKnown RBP4.58□□□□□ -1.68
CD44-237ENST00000534082 PROP1O75360 226 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 HTR1AP08908 422 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 GTF2F2P13984 249 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 ATP6V1E1P36543 226 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 CAPGP40121 348 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 RANBP1P43487 201 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 TFPI2P48307 235 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 ZNF85Q03923 595 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 HMGN3Q15651 99 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 SLC22A6Q4U2R8 563 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 C10orf55Q5SWW7 151 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 LIPKQ5VXJ0 399 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 THOC7Q6I9Y2 204 aaKnown RBP4.58□□□□□ -1.68
CD44-237ENST00000534082 CGB2Q6NT52 195 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 MORN3Q6PF18 240 aaPredicted RBP4.58□□□□□ -1.68
CD44-237ENST00000534082 SLC25A42Q86VD7 318 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 S100A13Q99584 98 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 SPIN2AQ99865 258 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 SPIN2BQ9BPZ2 258 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 AGMATQ9BSE5 352 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 YTHDF1Q9BYJ9 559 aaKnown RBP4.58□□□□□ -1.68
CD44-237ENST00000534082 PRRG3Q9BZD7 231 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 MAGIXQ9H6Y5 334 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 DAZ1Q9NQZ3 744 aaKnown RBP4.58□□□□□ -1.68
CD44-237ENST00000534082 PAK1IP1Q9NWT1 392 aaPredicted RBP4.58□□□□□ -1.68
CD44-237ENST00000534082 PTTG2Q9NZH5 202 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 ABRACLQ9P1F3 81 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 ZNF257Q9Y2Q1 563 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 GMPPBQ9Y5P6 360 aa4.58□□□□□ -1.68
CD44-237ENST00000534082 MFSD2BA6NFX1 497 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 C9orf118A6NHY6 69 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 M0R1X1 148 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 ITGB1BP1O14713 200 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 ZNF780AO75290 641 aaPredicted RBP4.57□□□□□ -1.68
CD44-237ENST00000534082 GIG44P09565 113 aaPredicted RBP4.57□□□□□ -1.68
CD44-237ENST00000534082 C4BPBP20851 252 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 PSMB6P28072 239 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 GPR183P32249 361 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 CCR9P51686 369 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 CMC4P56277 68 aaPredicted RBP4.57□□□□□ -1.68
CD44-237ENST00000534082 B2MP61769 119 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 FAM98BQ52LJ0 330 aaKnown RBP4.57□□□□□ -1.68
CD44-237ENST00000534082 IDO2Q6ZQW0 420 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 HS3ST5Q8IZT8 346 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 ZNRF2Q8NHG8 242 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 ATG101Q9BSB4 218 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 ISG20L2Q9H9L3 353 aaKnown RBP4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms