RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 CGB1A6NKQ9 187 aa12.6□□□□□ -0.39
PCDHA9-202ENST00000532602 SNRPEP62304 92 aaKnown RBP12.6□□□□□ -0.39
PCDHA9-202ENST00000532602 C19orf24Q9BVV8 132 aa12.6□□□□□ -0.39
PCDHA9-202ENST00000532602 C7orf77A4D0Y5 90 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 RNF224P0DH78 156 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 PRB3Q04118 309 aaPredicted RBP12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 OR4C5Q8NGB2 326 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 ZNF837Q96EG3 531 aaPredicted RBP12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 BET1LQ9NYM9 111 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 DPM3Q9P2X0 92 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 M0R3E3 92 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 HLA-DQB1P01920 261 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 ZNF708P17019 499 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 MFAP2P55001 183 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 C11orf91Q3C1V1 193 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 GALNT14Q96FL9 552 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 DNAJC4Q9NNZ3 241 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 PGPA6NDG6 321 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 NUTF2P61970 127 aaKnown RBP12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 MRPL14Q6P1L8 145 aaKnown RBP12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 C9orf106Q8NAJ2 232 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 ZNRF1Q8ND25 227 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 C7orf66A4D0T2 115 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 CECR9P0C854 216 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 ZNF880Q6PDB4 577 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 PET117Q6UWS5 81 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 AP4M1O00189 453 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 MT-ND6P03923 174 aa12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 SSBP3Q9BWW4 388 aaPredicted RBP12.59□□□□□ -0.39
PCDHA9-202ENST00000532602 A0A0G2JLM5 398 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 FAM53AQ6NSI3 398 aaPredicted RBP12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 AQP3Q92482 292 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 PPP1R3EQ9H7J1 279 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 AURKAIP1Q9NWT8 199 aaPredicted RBP12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 MRPS18CQ9Y3D5 142 aaKnown RBP12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 SPTBP11277 2137 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 IGHV1-2P23083 117 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 CFHR1Q03591 330 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 UNQ9370/PRO34162Q6UXP9 181 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 SPACA3Q8IXA5 215 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 TCF19Q9Y242 345 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 TRAV34A0A0B4J273 112 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 PINLYPA6NC86 204 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 TM4SF5O14894 197 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 OR51G1Q8NGK1 321 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 RNASE6Q93091 150 aaKnown RBP12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 DOCK6Q96HP0 2047 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 H0YL77 283 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 ZNF841Q6ZN19 808 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 SLC16A13Q7RTY0 426 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 FLVCR1-AS1Q8TAF5 88 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 GPR146Q96CH1 333 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 IMMP1LQ96LU5 166 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 PHLDA3Q9Y5J5 127 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 C8orf88P0DMB2 117 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 ZNF146Q15072 292 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 WDYHV1Q96HA8 205 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 CEP250Q9BV73 2442 aa12.58□□□□□ -0.4
PCDHA9-202ENST00000532602 VSIG10L2P0DP72 767 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 C1QTNF12Q5T7M4 302 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 RTN4RL2Q86UN3 420 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 C9orf62Q8N4C0 152 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 TAF15Q92804 592 aaKnown RBP eCLIP12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 JMJD8Q96S16 334 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 PLAUP00749 431 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 STAG3L2P0CL84 134 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 OR8A1Q8NGG7 326 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 SSTR5P35346 364 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 RUNX1Q01196 453 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 TNFRSF9Q07011 255 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 OR4X2Q8NGF9 303 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 OR1N2Q8NGR9 330 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 FUT9Q9Y231 359 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 CIDEAO60543 219 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 TBX6O95947 436 aaPredicted RBP12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 SULT1A2P50226 295 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 PACRGQ96M98 296 aaPredicted RBP12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 IL36RNQ9UBH0 155 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 PIN1P1O15428 100 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 LINC01590Q5TEZ4 76 aa12.57□□□□□ -0.4
PCDHA9-202ENST00000532602 RPL29P47914 159 aaKnown RBP12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 UCP3P55916 312 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 SGMS2Q8NHU3 365 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 CNOT1A5YKK6 2376 aaKnown RBP12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 OSR1Q8TAX0 266 aaPredicted RBP12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 KLF4O43474 513 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 GPX1P07203 203 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 CDKN1AP38936 164 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 SRSF6Q13247 344 aaKnown RBP12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 DEPPQ9NTK1 212 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 TRGV3P03979 118 aa12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 IBA57Q5T440 356 aaKnown RBP12.56□□□□□ -0.4
PCDHA9-202ENST00000532602 MIC13Q5XKP0 118 aa12.55□□□□□ -0.4
PCDHA9-202ENST00000532602 MOB4Q9Y3A3 225 aa12.55□□□□□ -0.4
PCDHA9-202ENST00000532602 P2RY4P51582 365 aa12.55□□□□□ -0.4
PCDHA9-202ENST00000532602 CX3CL1P78423 397 aa12.55□□□□□ -0.4
PCDHA9-202ENST00000532602 MEF2BQ02080 365 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-202ENST00000532602 MEF2CQ06413 473 aaPredicted RBP12.55□□□□□ -0.4
PCDHA9-202ENST00000532602 SELENOHQ8IZQ5 122 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms