RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CD177Q8N6Q3 437 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 DIRC2Q96SL1 478 aa16.02■□□□□ 0.15
VPS28-213ENST00000530983 HRASP01112 189 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 CECR9P0C854 216 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 HOXC12P31275 282 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 GCSAMLQ5JQS6 135 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 R3HDM4Q96D70 268 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 PCGF1Q9BSM1 259 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 C11orf94C9JXX5 98 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 PPP5D1E7EU14 171 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 CASP6P55212 293 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 HTD2P86397 168 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 LTC4SQ16873 150 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 CLEC12BQ2HXU8 276 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 ATG101Q9BSB4 218 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 OR6C3Q9NZP0 311 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 WDR83OSQ9Y284 106 aa16.01■□□□□ 0.15
VPS28-213ENST00000530983 CACNA1GO43497 2377 aa16■□□□□ 0.15
VPS28-213ENST00000530983 DUTP33316 252 aaKnown RBP16■□□□□ 0.15
VPS28-213ENST00000530983 ACOT6Q3I5F7 207 aaPredicted RBP16■□□□□ 0.15
VPS28-213ENST00000530983 ANAPC16Q96DE5 110 aa16■□□□□ 0.15
VPS28-213ENST00000530983 ASPMQ8IZT6 3477 aa16■□□□□ 0.15
VPS28-213ENST00000530983 A0A1W2PPQ1 181 aa16■□□□□ 0.15
VPS28-213ENST00000530983 SPINT2O43291 252 aa16■□□□□ 0.15
VPS28-213ENST00000530983 VENTXO95231 258 aa16■□□□□ 0.15
VPS28-213ENST00000530983 GCGP01275 180 aa16■□□□□ 0.15
VPS28-213ENST00000530983 ADH4P08319 380 aa16■□□□□ 0.15
VPS28-213ENST00000530983 CD1BP29016 333 aa16■□□□□ 0.15
VPS28-213ENST00000530983 PAX5Q02548 391 aa16■□□□□ 0.15
VPS28-213ENST00000530983 EDDM3AQ14507 147 aa16■□□□□ 0.15
VPS28-213ENST00000530983 AARDQ4LEZ3 155 aa16■□□□□ 0.15
VPS28-213ENST00000530983 C9orf106Q8NAJ2 232 aa16■□□□□ 0.15
VPS28-213ENST00000530983 PLPPR2Q96GM1 343 aa16■□□□□ 0.15
VPS28-213ENST00000530983 LRRC29Q8WV35 223 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 TMEM68Q96MH6 324 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 TET2Q6N021 2002 aaPredicted RBP15.99■□□□□ 0.15
VPS28-213ENST00000530983 PCNX2A6NKB5 2137 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 ZFHX4Q86UP3 3567 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 TRAV38-1A0A0B4J264 116 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 FCGR3BO75015 233 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 GPR12P47775 334 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 FAM3BP58499 235 aaPredicted RBP15.99■□□□□ 0.15
VPS28-213ENST00000530983 C1orf162Q8NEQ5 155 aaPredicted RBP15.99■□□□□ 0.15
VPS28-213ENST00000530983 Q8TCH9 128 aa15.99■□□□□ 0.15
VPS28-213ENST00000530983 HEATR1Q9H583 2144 aaKnown RBP15.98■□□□□ 0.15
VPS28-213ENST00000530983 GGCTO75223 188 aaKnown RBP15.98■□□□□ 0.15
VPS28-213ENST00000530983 ZNF718Q3SXZ3 478 aa15.98■□□□□ 0.15
VPS28-213ENST00000530983 TRAT1Q6PIZ9 186 aa15.98■□□□□ 0.15
VPS28-213ENST00000530983 OR4A8P0C604 315 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 EGR1P18146 543 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 BMP5P22003 454 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 PRDX2P32119 198 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 PDLIM4P50479 330 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 IGLV1-44P01699 117 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 CRYAAP02489 173 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 GCH1P30793 250 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 ATP5G3P48201 142 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 NUBP1P53384 320 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 EDDM3BP56851 147 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 GNB1P62873 340 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 OR2T10Q8NGZ9 312 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 TMEM170AQ8WVE7 144 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 RAB1CQ92928 201 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 SNHG12Q9BXW3 62 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 TUBG2Q9NRH3 451 aa15.97■□□□□ 0.15
VPS28-213ENST00000530983 INTS1Q8N201 2190 aaKnown RBP15.97■□□□□ 0.15
VPS28-213ENST00000530983 IGHV2OR16-5A0A0B4J2B6 119 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 A0A1B0GWJ7 208 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 HPRT1P00492 218 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 CD82P27701 267 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 UBE2G2P60604 165 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 TMEM249Q2WGJ8 235 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 MORN2Q502X0 79 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 ACTL10Q5JWF8 245 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 PRAMEF5Q5TYX0 476 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 MBNL2Q5VZF2 373 aaKnown RBP15.96■□□□□ 0.15
VPS28-213ENST00000530983 LINC01551Q86U37 167 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 OR5T1Q8NG75 326 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 IGKV1D-17A0A075B6S4 117 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 IGHV1-18A0A0C4DH31 117 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 GALR2O43603 387 aaPredicted RBP15.96■□□□□ 0.15
VPS28-213ENST00000530983 TYMSP04818 313 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 SRP14P37108 136 aaKnown RBP15.96■□□□□ 0.15
VPS28-213ENST00000530983 FAM90A1Q86YD7 464 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 VKORC1L1Q8N0U8 176 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 ACY3Q96HD9 319 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 GNG12Q9UBI6 72 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 CFAP47Q6ZTR5 3102 aa15.96■□□□□ 0.15
VPS28-213ENST00000530983 FAM90A9PA6NNJ1 464 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 RRHO14718 337 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 PDE6DO43924 150 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 TREML4Q6UXN2 200 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 FDCSPQ8NFU4 85 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 TMEM37Q8WXS4 190 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 DERL1Q9BUN8 251 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 FAM234AQ9H0X4 552 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 FUT9Q9Y231 359 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 PRSS46E5RG02 174 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 G0S2P27469 103 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 CHRNA7P36544 502 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms