RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IFI27L2Q9H2X8 130 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 CALYQ9NYX4 217 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 CACNA1DQ01668 2161 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 IFITM10A6NMD0 228 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 PPP1R2P9O14990 202 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 RPL23P62829 140 aaKnown RBP17.59■□□□□ 0.41
VPS28-205ENST00000526204 ZNF474Q6S9Z5 364 aaPredicted RBP17.59■□□□□ 0.41
VPS28-205ENST00000526204 RAB1CQ92928 201 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 NEIL1Q96FI4 390 aaPredicted RBP17.59■□□□□ 0.41
VPS28-205ENST00000526204 PLPPR2Q96GM1 343 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 MIOXQ9UGB7 285 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 PAGE4O60829 102 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 RPL39P5Q59GN2 51 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 ALKBH2Q6NS38 261 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 SPNS3Q6ZMD2 512 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 SSX9Q7RTT3 188 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 Q8N7P7 452 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 SSX3Q99909 188 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 HEYLQ9NQ87 328 aaPredicted RBP17.58■□□□□ 0.4
VPS28-205ENST00000526204 ZNF318Q5VUA4 2279 aa17.58■□□□□ 0.4
VPS28-205ENST00000526204 IGLV3-9A0A075B6K5 115 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 TRGC1P0CF51 173 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 CGB3P0DN86 165 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 CGB7P0DN87 165 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 ZNF134P52741 427 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 TMPRSS3P57727 454 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 OR10A7Q8NGE5 316 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 ABHD5Q8WTS1 349 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 VENTXO95231 258 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 PFN1P07737 140 aaKnown RBP17.57■□□□□ 0.4
VPS28-205ENST00000526204 GATA4P43694 442 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 VDAC2P45880 294 aaPredicted RBP17.57■□□□□ 0.4
VPS28-205ENST00000526204 RELBQ01201 579 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 TLE1Q04724 770 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 C16orf82Q7Z2V1 217 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.57■□□□□ 0.4
VPS28-205ENST00000526204 OR4S2Q8NH73 311 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 Q8TCH9 128 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 FRZBQ92765 325 aa17.57■□□□□ 0.4
VPS28-205ENST00000526204 SPRY3O43610 288 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 GATAD1Q8WUU5 269 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 ITLN1Q8WWA0 313 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 ANAPC16Q96DE5 110 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 OR5B12Q96R08 314 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 PYGO2Q9BRQ0 406 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 FAM234AQ9H0X4 552 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 EP300Q09472 2414 aaPredicted RBP17.56■□□□□ 0.4
VPS28-205ENST00000526204 A0A1W2PPV4 95 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 H7BYZ3 331 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 PDE6DO43924 150 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 OPRK1P41145 380 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 SELENOVP59797 346 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 FAM222BQ8WU58 562 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 DDB2Q92466 427 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 SRD5A3Q9H8P0 318 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 TMEM140Q9NV12 185 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 FAM215AQ9Y5M1 114 aa17.56■□□□□ 0.4
VPS28-205ENST00000526204 CHD3Q12873 2000 aaKnown RBP17.56■□□□□ 0.4
VPS28-205ENST00000526204 C11orf94C9JXX5 98 aa17.55■□□□□ 0.4
VPS28-205ENST00000526204 TIMP3P35625 211 aa17.55■□□□□ 0.4
VPS28-205ENST00000526204 SPRNQ5BIV9 151 aa17.55■□□□□ 0.4
VPS28-205ENST00000526204 C1orf185Q5T7R7 199 aa17.55■□□□□ 0.4
VPS28-205ENST00000526204 TGIF2LYQ8IUE0 185 aa17.55■□□□□ 0.4
VPS28-205ENST00000526204 OTOGLQ3ZCN5 2332 aa17.55■□□□□ 0.4
VPS28-205ENST00000526204 TRGV8A0A0C4DH27 118 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 LINC00587B1AMM8 73 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 PHOX2AO14813 284 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 GFRA3O60609 400 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 PLA2G5P39877 138 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 VHLLQ6RSH7 139 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 GFOD1Q9NXC2 390 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 DMXL1Q9Y485 3027 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 KBTBD11-OT1A0A1B0GTJ5 212 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 RRHO14718 337 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 C17orf58Q2M2W7 97 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 TREML4Q6UXN2 200 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 VKORC1L1Q8N0U8 176 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 HIST3H2BBQ8N257 126 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 OR51G1Q8NGK1 321 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 SDSLQ96GA7 329 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 RNF7Q9UBF6 113 aa17.54■□□□□ 0.4
VPS28-205ENST00000526204 PRSS46E5RG02 174 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 GALR1P47211 349 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 Q6ZS92 163 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 SFXN3Q9BWM7 321 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 KCNIP2Q9NS61 270 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 TCF19Q9Y242 345 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 DIDO1Q9BTC0 2240 aaKnown RBP17.53■□□□□ 0.4
VPS28-205ENST00000526204 INTS1Q8N201 2190 aaKnown RBP17.53■□□□□ 0.4
VPS28-205ENST00000526204 PTPRBP23467 1997 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 PRR14LQ5THK1 2151 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 TRGV10A0A0A0MS01 117 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 IGHV3-7P01780 117 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 GYPAP02724 150 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 THBS3P49746 956 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 ADTRPQ96IZ2 230 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 TXNDC17Q9BRA2 123 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 IL19Q9UHD0 177 aa17.53■□□□□ 0.4
VPS28-205ENST00000526204 PRRC2CQ9Y520 2896 aaKnown RBP17.52■□□□□ 0.4
VPS28-205ENST00000526204 SLC31A2O15432 143 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms