RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 AIFM2Q9BRQ8 373 aa10.53□□□□□ -0.72
CPNE3-205ENST00000522240 HILPDAQ9Y5L2 63 aa10.53□□□□□ -0.72
CPNE3-205ENST00000522240 CCSO14618 274 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 TIMM23O14925 209 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 HRASP01112 189 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 HOXB5P09067 269 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 GIPP09681 153 aaPredicted RBP10.52□□□□□ -0.73
CPNE3-205ENST00000522240 P0C879 139 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 SLC25A6P12236 298 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 CXCL3P19876 107 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 ERVK-16P61578 105 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 SRSF4Q08170 494 aaKnown RBP10.52□□□□□ -0.73
CPNE3-205ENST00000522240 SSX2Q16385 188 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 RUSC1-AS1Q66K80 236 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 GSG1LQ6UXU4 331 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 MOB3BQ86TA1 216 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 R3HDM4Q96D70 268 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 SEC22AQ96IW7 307 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 MMP24Q9Y5R2 645 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 FBN3Q75N90 2809 aa10.52□□□□□ -0.73
CPNE3-205ENST00000522240 MARCH11A6NNE9 402 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 FAM90A9PA6NNJ1 464 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 H7C2Y5 167 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 CCNKO75909 580 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 OR2A4O95047 310 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 VENTXO95231 258 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 IGKV1-5P01602 117 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 IGKV1-16P04430 117 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 DYNLT3P51808 116 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 H2BFSP57053 126 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 RAP2BP61225 183 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 C9orf139Q6ZV77 190 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 DYNAPQ8N1N2 210 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 RNASE11Q8TAA1 199 aaKnown RBP10.51□□□□□ -0.73
CPNE3-205ENST00000522240 NANPQ8TBE9 248 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 FLYWCH2Q96CP2 140 aaKnown RBP10.51□□□□□ -0.73
CPNE3-205ENST00000522240 RRNAD1Q96FB5 475 aaKnown RBP10.51□□□□□ -0.73
CPNE3-205ENST00000522240 HARBI1Q96MB7 349 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 OR2A7Q96R45 310 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 RNF5Q99942 180 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 NEURL2Q9BR09 285 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 ZNF436Q9C0F3 470 aaPredicted RBP10.51□□□□□ -0.73
CPNE3-205ENST00000522240 NUP50Q9UKX7 468 aa10.51□□□□□ -0.73
CPNE3-205ENST00000522240 IGHV3OR16-10A0A075B7F0 116 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 C5orf51A6NDU8 294 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 SHOXO15266 292 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 FBP1P09467 338 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 BRS3P32247 399 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 LGALS7P47929 136 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 CYCSP99999 105 aaKnown RBP10.5□□□□□ -0.73
CPNE3-205ENST00000522240 EBI3Q14213 229 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 THOC7Q6I9Y2 204 aaKnown RBP10.5□□□□□ -0.73
CPNE3-205ENST00000522240 BRD3OSQ6XYD6 125 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 TCTE3Q8IZS6 198 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 C17orf50Q8WW18 174 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 ST6GAL2Q96JF0 529 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 C2orf50Q96LR7 162 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 PDCD10Q9BUL8 212 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 NMES1Q9C002 83 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 MS4A7Q9GZW8 240 aaPredicted RBP10.5□□□□□ -0.73
CPNE3-205ENST00000522240 MEGF9Q9H1U4 602 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 COA4Q9NYJ1 87 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 ABCA1O95477 2261 aa10.5□□□□□ -0.73
CPNE3-205ENST00000522240 IGHV3-72A0A0B4J1Y9 119 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 A0A0G2JRQ6 117 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 A0A0U1RQK1 487 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 A0A1B0GU03 582 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 MPTX1A8MV57 137 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 FAM25EA8MYX2 175 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 PFDN1O60925 122 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 SPDEFO95238 335 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 SIX6O95475 246 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 KRASP01116 189 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 G6PCP35575 357 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 CD83Q01151 205 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 AANATQ16613 207 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 IAH1Q2TAA2 248 aaPredicted RBP10.49□□□□□ -0.73
CPNE3-205ENST00000522240 THNSL2Q86YJ6 484 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 ZBTB8BQ8NAP8 495 aaPredicted RBP10.49□□□□□ -0.73
CPNE3-205ENST00000522240 DMBX1Q8NFW5 382 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 VSTM2AQ8TAG5 236 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 GPR146Q96CH1 333 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 OR10C1Q96KK4 312 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 RHOVQ96L33 236 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 TSNAXQ99598 290 aaKnown RBP10.49□□□□□ -0.73
CPNE3-205ENST00000522240 RANBP3Q9H6Z4 567 aaPredicted RBP10.49□□□□□ -0.73
CPNE3-205ENST00000522240 TMEM140Q9NV12 185 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 TMEM160Q9NX00 188 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 BET1LQ9NYM9 111 aa10.49□□□□□ -0.73
CPNE3-205ENST00000522240 TLN2Q9Y4G6 2542 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 C13orf42A0A1B0GVH6 325 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 MOSP00540 346 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 FGF2P09038 288 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 SAA1P0DJI8 122 aaPredicted RBP10.48□□□□□ -0.73
CPNE3-205ENST00000522240 UBE2KP61086 200 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 RPS16P62249 146 aaKnown RBP10.48□□□□□ -0.73
CPNE3-205ENST00000522240 SMCO1Q147U7 214 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 VMA21Q3ZAQ7 101 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 OR4A47Q6IF82 309 aa10.48□□□□□ -0.73
CPNE3-205ENST00000522240 H2BFWTQ7Z2G1 175 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms